Man page - gffutils-cli-create(1)

Packages contains this manual

Package:  python3-gffutils
apt-get install python3-gffutils

Manuals in package:
• gffutils-cli(1)
• gffutils-cli-clean(1)
• gffutils-cli-sanitize(1)
• gffutils-cli-common(1)
• gffutils-cli-region(1)
• gffutils-cli-create(1)
• gffutils-cli-rmdups(1)
• gffutils-cli-parents(1)
• gffutils-cli-fetch(1)
• gffutils-cli-children(1)
Documentations in package:
• python3-gffutils

Manual

GFFUTILS-CLI_CREATE

NAME
DESCRIPTION
positional arguments:
options:

---

NAME

gffutils-cli_create - Create a database

DESCRIPTION

usage: gffutils-cli create [-h] [-o OUTPUT] [-f] [-q] [-m MERGE]
[--disable-infer-genes]

[--disable-infer-transcripts] filename

Create a database.

positional arguments:

filename

GFF or GTF file to use

options:

-h , --help

show this help message and exit

-o , --output OUTPUT

Database to create. Default is to append ".db" to the end of the input filename (default: -)

-f , --force

Overwrite an existing database (default: False)

-q , --quiet

Suppress the reporting of timing information when creating the database (default: False)

-m , --merge MERGE

Merge strategy to be used if if duplicate IDs are found. (default: ’merge’)

--disable-infer-genes

Disable inferring of gene extents for GTF files. Use this if your GTF file already has "gene" featuretypes (default: False)

--disable-infer-transcripts

Disable inferring of transcript extents for GTF files. Use this if your GTF file already has "transcript" featuretypes (default: False)

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