Man page - reapr-seqrename(1)

Packages contains this manual

Package:  reapr
apt-get install reapr

Manuals in package:
• reapr-perfectfrombam(1)
• reapr-preprocess(1)
• reapr-facheck(1)
• reapr-gapresize(1)
• reapr-perfectmap(1)
• reapr-plots(1)
• reapr-score(1)
• reapr(1)
• reapr-stats(1)
• reapr-break(1)
• reapr-seqrename(1)
• reapr-smaltmap(1)
• reapr-pipeline(1)
• reapr-summary(1)
Documentations in package:
• reapr

Manual

REAPR-SEQRENAME

NAME
SYNOPSIS
DESCRIPTION
SEE ALSO

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NAME

reapr-seqrename - renames all sequences in a BAM file

SYNOPSIS

reapr seqrename <renamefile> <in.bam> <out.bam>

DESCRIPTION

<renamefile> is the file .info made by facheck , which contains the mapping of old name to new name.

SEE ALSO

reapr(1)

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