Man page - r_mds(1)

Packages contains this manual

Package:  seer
apt-get install seer

Manuals in package:
• blastn_to_phandango(1)
• blast_top_hits(1)
• reformat_output(1)
• filter_seer(1)
• seer(1)
• kmds(1)
• mash2matrix(1)
• mapping_to_phandango(1)
• map_back(1)
• hits_to_fastq(1)
Documentations in package:
• seer

Manual

R_MDS

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
Required
Optional
AUTHOR

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NAME

R_mds - project distance matrix into lower number of dimensions

SYNOPSIS

R_mds -k <filtered_kmers.txt> -p <pheno_file>

DESCRIPTION

Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details

OPTIONS

Required

-d , --dist

Distance matrix output by kmds

-p , --pheno

Phenotype file used by seer

Optional

-o , --output

Output prefix (default ’all_structure’)

	--pc		Number of dimensions to project into (default 3)
	-R		R executable (default ’which R’)

-h , --help

Displays this message

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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