Man page - mapping_to_phandango(1)

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Package: seer
apt-get install seer

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mapping_to_phandango - create a plot file for visualisation in phandango

mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot

Creates a plot file for visualisation in phandango

-s , --sam

Sam file of kmers mapped to reference (unsorted)

-k , --kmers

Kmers that were mapped

-m , --map

Minimum mapping quality

-h , --help

Displays this message

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.