Man page - gmer_counter(1)

Packages contains this manual

Package: genometester
apt-get install genometester

Manuals in package:

Documentations in package:

gmer_counter - count k-mers from raw reads in FASTQ file

gmer_counter [ OPTIONS ] <SEQUENCES...>

	-db DATABASE - SNP/KMER database file
	-dbb DBBINARY - binary database file
	-w FILENAME - write binary database to file
	-32 - use 32-bit integeres for counts (default 16-bit)
	--max_kmers NUM - maximum number of kmers per node
	--header - print header row
	--total - print the total number of kmers per node
	--unique - print the number of nonzero kmers per node
	--kmers - print individual kmer counts (default if no other output)
	--compile_index - Add read index to database and write it to file
	--distribution NUM - print kmer distribution (up to given number)
	--num_threads - number of worker threads (default 24)
	--low_memory - optimize for low memory usage
	-D - increase debug level

You could find some usage examples in /usr/share/doc/genometester/README.FastGT.md