-v , --version - print version information and exit

-h , --help - print this usage screen and exit

-stat - print statistics of the list file and exit

-median - print min/max/median/average and exit

-q , --query - single query word

-f , --queryfile - list of query words in a file

-s , --seqfile - FastA/FastQ file

-l , --listfile - list file made by glistmaker

-mm , --mismatch NUMBER - specify number of mismatches (default 0, can be used with -d and -dd )

-p , --perfectmatch NUMBER - specify number of 3’ perfect matches (default 0)

-min , --minfreq NUMBER - minimum frequency of the printed words (default 0)

-max , --maxfreq NUMBER - maximum frequency of the printed words (default MAX_UINT)

-all - in case of mismatches prints all found words

-D - increase debug level