Package - samtools
Package: samtools
apt-get install samtools
apt-get install samtools
Manuals in package:
- samtools-cram-size(1)
- samtools-addreplacerg(1)
- samtools-mpileup(1)
- ace2sam(1)
- wgsim(1)
- samtools-consensus(1)
- samtools-phase(1)
- samtools(1)
- samtools-reset(1)
- samtools-ampliconclip(1)
- samtools-depth(1)
- samtools-flagstat(1)
- samtools-coverage(1)
- samtools-dict(1)
- samtools-head(1)
- samtools-sort(1)
- samtools-flags(1)
- samtools-fastq(1)
- samtools-ampliconstats(1)
- samtools-calmd(1)
- samtools-bedcov(1)
- samtools-index(1)
- samtools-merge(1)
- samtools-fasta(1)
- samtools-fqidx(1)
- samtools-collate(1)
- samtools-view(1)
- samtools-split(1)
- samtools-quickcheck(1)
- samtools-samples(1)
- samtools-idxstats(1)
- samtools-fixmate(1)
- samtools-reheader(1)
- samtools-rmdup(1)
- samtools-markdup(1)
- samtools-targetcut(1)
- samtools-depad(1)
- samtools-tview(1)
- samtools-faidx(1)
- samtools-stats(1)
- samtools.pl(1)
- samtools-import(1)
- samtools-cat(1)
- samtools-reference(1)
Documentations in package:
Primary informations
Download package: http://deb.debian.org/debian/pool/main/s/samtools/samtools_1.21-1_amd64.deb (Size: 651.5KiB)| Property | Value |
|---|---|
| Package | samtools |
| Version | 1.21-1 |
| Installed-Size | 1447 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Depends | libc6 (>= 2.34), libhts3t64 (>= 1.21), libncurses6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4) |
| Suggests | cwltool |
| Description | processing sequence alignments in SAM, BAM and CRAM formats |
| Description-md5 | 7ede2464ff1fbf70b3103067b7192874 |
| Homepage | https://www.htslib.org/ |
| Tag | field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, network::client, protocol::ftp, protocol::http, role::program, scope::utility, uitoolkit::ncurses, use::analysing, use::calculating, use::filtering, works-with::biological-sequence |
| Section | science |
| Priority | optional |
| Filename | pool/main/s/samtools/samtools_1.21-1_amd64.deb |
| Size | 667112 |
| MD5sum | 6e3939b6d50989c325ba8c444fbdcd39 |
| SHA256 | d3ec95f52ed0a68bb783f7a6f841991b43d3b431197da55654a80fb1de217c20 |
Files in package
- /usr/bin/ace2sam
- /usr/bin/blast2sam.pl
- /usr/bin/bowtie2sam.pl
- /usr/bin/export2sam.pl
- /usr/bin/fasta-sanitize.pl
- /usr/bin/interpolate_sam.pl
- /usr/bin/maq2sam-long
- /usr/bin/maq2sam-short
- /usr/bin/md5fa
- /usr/bin/md5sum-lite
- /usr/bin/novo2sam.pl
- /usr/bin/plot-ampliconstats
- /usr/bin/plot-bamstats
- /usr/bin/psl2sam.pl
- /usr/bin/sam2vcf.pl
- /usr/bin/samtools
- /usr/bin/samtools.pl
- /usr/bin/seq_cache_populate.pl
- /usr/bin/soap2sam.pl
- /usr/bin/wgsim
- /usr/bin/wgsim_eval.pl
- /usr/bin/zoom2sam.pl
- /usr/share/commonwl/samtools-faidx.cwl
- /usr/share/commonwl/samtools-index.cwl
- /usr/share/commonwl/samtools-rmdup.cwl
- /usr/share/commonwl/samtools-sort.cwl
- /usr/share/commonwl/samtools-view.cwl
- /usr/share/doc/samtools/AUTHORS
- /usr/share/doc/samtools/README.Debian
- /usr/share/doc/samtools/README.gz
- /usr/share/doc/samtools/README.test
- /usr/share/doc/samtools/changelog.Debian.gz
- /usr/share/doc/samtools/changelog.gz
- /usr/share/doc/samtools/copyright
- /usr/share/doc/samtools/examples/00README.txt
- /usr/share/doc/samtools/examples/ex1.fa
- /usr/share/doc/samtools/examples/ex1.sam.gz
- /usr/share/doc/samtools/examples/toy.fa
- /usr/share/doc/samtools/examples/toy.sam
- /usr/share/lintian/overrides/samtools
- /usr/share/man/man1/ace2sam.1.gz
- /usr/share/man/man1/samtools-addreplacerg.1.gz
- /usr/share/man/man1/samtools-ampliconclip.1.gz
- /usr/share/man/man1/samtools-ampliconstats.1.gz
- /usr/share/man/man1/samtools-bedcov.1.gz
- /usr/share/man/man1/samtools-calmd.1.gz
- /usr/share/man/man1/samtools-cat.1.gz
- /usr/share/man/man1/samtools-collate.1.gz
- /usr/share/man/man1/samtools-consensus.1.gz
- /usr/share/man/man1/samtools-coverage.1.gz
- /usr/share/man/man1/samtools-cram-size.1.gz
- /usr/share/man/man1/samtools-depad.1.gz
- /usr/share/man/man1/samtools-depth.1.gz
- /usr/share/man/man1/samtools-dict.1.gz
- /usr/share/man/man1/samtools-faidx.1.gz
- /usr/share/man/man1/samtools-fasta.1.gz
- /usr/share/man/man1/samtools-fastq.1.gz
- /usr/share/man/man1/samtools-fixmate.1.gz
- /usr/share/man/man1/samtools-flags.1.gz
- /usr/share/man/man1/samtools-flagstat.1.gz
- /usr/share/man/man1/samtools-fqidx.1.gz
- /usr/share/man/man1/samtools-head.1.gz
- /usr/share/man/man1/samtools-idxstats.1.gz
- /usr/share/man/man1/samtools-import.1.gz
- /usr/share/man/man1/samtools-index.1.gz
- /usr/share/man/man1/samtools-markdup.1.gz
- /usr/share/man/man1/samtools-merge.1.gz
- /usr/share/man/man1/samtools-mpileup.1.gz
- /usr/share/man/man1/samtools-phase.1.gz
- /usr/share/man/man1/samtools-quickcheck.1.gz
- /usr/share/man/man1/samtools-reference.1.gz
- /usr/share/man/man1/samtools-reheader.1.gz
- /usr/share/man/man1/samtools-reset.1.gz
- /usr/share/man/man1/samtools-rmdup.1.gz
- /usr/share/man/man1/samtools-samples.1.gz
- /usr/share/man/man1/samtools-sort.1.gz
- /usr/share/man/man1/samtools-split.1.gz
- /usr/share/man/man1/samtools-stats.1.gz
- /usr/share/man/man1/samtools-targetcut.1.gz
- /usr/share/man/man1/samtools-tview.1.gz
- /usr/share/man/man1/samtools-view.1.gz
- /usr/share/man/man1/samtools.1.gz
- /usr/share/man/man1/samtools.pl.1.gz
- /usr/share/man/man1/wgsim.1.gz