Man page - wgsim(1)
Packages contas this manual
- samtools-cram-size(1)
- samtools-addreplacerg(1)
- samtools-mpileup(1)
- ace2sam(1)
- wgsim(1)
- samtools-consensus(1)
- samtools-phase(1)
- samtools(1)
- samtools-reset(1)
- samtools-ampliconclip(1)
- samtools-depth(1)
- samtools-flagstat(1)
- samtools-coverage(1)
- samtools-dict(1)
- samtools-head(1)
- samtools-sort(1)
- samtools-flags(1)
- samtools-fastq(1)
- samtools-ampliconstats(1)
- samtools-calmd(1)
- samtools-bedcov(1)
- samtools-index(1)
- samtools-merge(1)
- samtools-fasta(1)
- samtools-fqidx(1)
- samtools-collate(1)
- samtools-view(1)
- samtools-split(1)
- samtools-quickcheck(1)
- samtools-samples(1)
- samtools-idxstats(1)
- samtools-fixmate(1)
- samtools-reheader(1)
- samtools-rmdup(1)
- samtools-markdup(1)
- samtools-targetcut(1)
- samtools-depad(1)
- samtools-tview(1)
- samtools-faidx(1)
- samtools-stats(1)
- samtools.pl(1)
- samtools-import(1)
- samtools-cat(1)
- samtools-reference(1)
Package: samtools
apt-get install samtools
apt-get install samtools
Manuals in package:
Documentations in package:
Manual
| WGSIM(1) | User Commands | WGSIM(1) |
NAME
wgsim - short read simulator
SYNOPSIS
wgsim [options] <in.ref.fa> <out.read1.fq> <out.read2.fq>
OPTIONS
- -e FLOAT
- base error rate [0.020]
- -d INT
- outer distance between the two ends [500]
- -s INT
- standard deviation [50]
- -N INT
- number of read pairs [1000000]
- -1 INT
- length of the first read [70]
- -2 INT
- length of the second read [70]
- -r FLOAT
- rate of mutations [0.0010]
- -R FLOAT
- fraction of indels [0.15]
- -X FLOAT
- probability an indel is extended [0.30]
- -S INT
- seed for random generator [-1]
- -h
- haplotype mode
AUTHOR
The software was written by Heng Li <lh3@sanger.ac.uk>
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| December 2015 | wgsim 1.2 |