Man page - wgsim(1)

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Package:  samtools
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Documentations in package:
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Manual

WGSIM

NAME
SYNOPSIS
OPTIONS
AUTHOR

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NAME

wgsim - short read simulator

SYNOPSIS

wgsim [ options ] <in.ref.fa> <out.read1.fq> <out.read2.fq>

OPTIONS

-e FLOAT

base error rate [0.020]

	-d INT		outer distance between the two ends [500]
	-s INT		standard deviation [50]
	-N INT		number of read pairs [1000000]
	-1 INT		length of the first read [70]
	-2 INT		length of the second read [70]

-r FLOAT

rate of mutations [0.0010]

-R FLOAT

fraction of indels [0.15]

-X FLOAT

probability an indel is extended [0.30]

	-S INT		seed for random generator [-1]
	-h		haplotype mode

AUTHOR

The software was written by Heng Li <lh3@sanger.ac.uk>

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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