Package - fasta3

Package: fasta3
apt-get install fasta3

Manuals in package:

Documentations in package:

fasta3

Primary informations

Download package: http://deb.debian.org/debian/pool/main/f/fasta3/fasta3_36.3.8i.14-Nov-2020-3_amd64.deb (Size: 954.8KiB)

Property	Value
Package	fasta3
Version	36.3.8i.14-Nov-2020-3
Installed-Size	7218
Maintainer	Debian Med Packaging Team
Architecture	amd64
Depends	libc6 (>= 2.34), python3
Recommends	r-base-core
Suggests	perl:any, libdbi-perl, libwww-perl, libjson-perl, libhtml-tableextract-perl, libxml-twig-perl, liburi-encode-perl, libdbd-mysql-perl, python3-mysqldb, python3-mysql.connector, python3-requests, ncbi-blast+, bedtools
Description	tools for searching collections of biological sequences
Description-md5	0c5f0c74fdf5df990b61c52bee98824e
Homepage	https://fasta.bioch.virginia.edu
Section	science
Priority	optional
Filename	pool/main/f/fasta3/fasta3_36.3.8i.14-Nov-2020-3_amd64.deb
Size	977764
MD5sum	391ca6c68bdd5fa4a88a4851d4492d66
SHA256	cf25e232d1575fb53a6008d09789981c845be26abd7ec3915c1aa5594088c86f

Files in package

/usr/bin/fasta36
/usr/bin/fastf36
/usr/bin/fastm36
/usr/bin/fasts36
/usr/bin/fastx36
/usr/bin/fasty36
/usr/bin/ggsearch36
/usr/bin/glsearch36
/usr/bin/lalign36
/usr/bin/map_db
/usr/bin/ssearch36
/usr/bin/tfastf36
/usr/bin/tfastm36
/usr/bin/tfasts36
/usr/bin/tfastx36
/usr/bin/tfasty36
/usr/share/doc/fasta3/changelog.Debian.gz
/usr/share/doc/fasta3/copyright
/usr/share/doc/fasta3/examples/seq/bovgh.seq
/usr/share/doc/fasta3/examples/seq/bovprl.seq
/usr/share/doc/fasta3/examples/seq/dna_test_s.nlib
/usr/share/doc/fasta3/examples/seq/dyr_human.aa
/usr/share/doc/fasta3/examples/seq/egmsmg.aa
/usr/share/doc/fasta3/examples/seq/grou_drome.pseg
/usr/share/doc/fasta3/examples/seq/gst.nlib
/usr/share/doc/fasta3/examples/seq/gst.seq
/usr/share/doc/fasta3/examples/seq/gstm1_human.vaa
/usr/share/doc/fasta3/examples/seq/gstm1b_human.nt
/usr/share/doc/fasta3/examples/seq/gstm1b_human_fs.nt
/usr/share/doc/fasta3/examples/seq/gstt1_drome.aa
/usr/share/doc/fasta3/examples/seq/gtm1_human.aa
/usr/share/doc/fasta3/examples/seq/gtt1_drome.aa
/usr/share/doc/fasta3/examples/seq/h10_human.aa
/usr/share/doc/fasta3/examples/seq/hahu.aa
/usr/share/doc/fasta3/examples/seq/hsgstm1b.gcg
/usr/share/doc/fasta3/examples/seq/hsgstm1b.seq
/usr/share/doc/fasta3/examples/seq/humgstd.seq
/usr/share/doc/fasta3/examples/seq/lcbo.aa
/usr/share/doc/fasta3/examples/seq/m1r.aa
/usr/share/doc/fasta3/examples/seq/m2.aa
/usr/share/doc/fasta3/examples/seq/mchu.aa
/usr/share/doc/fasta3/examples/seq/mgstm1.3nt
/usr/share/doc/fasta3/examples/seq/mgstm1.aa
/usr/share/doc/fasta3/examples/seq/mgstm1.aaa
/usr/share/doc/fasta3/examples/seq/mgstm1.e05
/usr/share/doc/fasta3/examples/seq/mgstm1.eeq
/usr/share/doc/fasta3/examples/seq/mgstm1.esq
/usr/share/doc/fasta3/examples/seq/mgstm1.gcg
/usr/share/doc/fasta3/examples/seq/mgstm1.lc
/usr/share/doc/fasta3/examples/seq/mgstm1.nt
/usr/share/doc/fasta3/examples/seq/mgstm1.nt1
/usr/share/doc/fasta3/examples/seq/mgstm1.nt12r
/usr/share/doc/fasta3/examples/seq/mgstm1.nt13
/usr/share/doc/fasta3/examples/seq/mgstm1.nt13r
/usr/share/doc/fasta3/examples/seq/mgstm1.nt1r
/usr/share/doc/fasta3/examples/seq/mgstm1.nts
/usr/share/doc/fasta3/examples/seq/mgstm1.raa
/usr/share/doc/fasta3/examples/seq/mgstm1.rev
/usr/share/doc/fasta3/examples/seq/mgstm1.seq
/usr/share/doc/fasta3/examples/seq/mgstm1_genclone.seq
/usr/share/doc/fasta3/examples/seq/mgtt2_x.seq
/usr/share/doc/fasta3/examples/seq/ms1.aa
/usr/share/doc/fasta3/examples/seq/mu.lib
/usr/share/doc/fasta3/examples/seq/musplfm.aa
/usr/share/doc/fasta3/examples/seq/mwkw.aa
/usr/share/doc/fasta3/examples/seq/mwrtc1.aa
/usr/share/doc/fasta3/examples/seq/myosin_bp.aa
/usr/share/doc/fasta3/examples/seq/n0.aa
/usr/share/doc/fasta3/examples/seq/n1.aa
/usr/share/doc/fasta3/examples/seq/n2.aa
/usr/share/doc/fasta3/examples/seq/n2_fs.lib
/usr/share/doc/fasta3/examples/seq/n2s.aa
/usr/share/doc/fasta3/examples/seq/n2t.aa
/usr/share/doc/fasta3/examples/seq/n_fs.lib
/usr/share/doc/fasta3/examples/seq/ngt.aa
/usr/share/doc/fasta3/examples/seq/ngts.aa
/usr/share/doc/fasta3/examples/seq/oohu.aa
/usr/share/doc/fasta3/examples/seq/oohu.raa
/usr/share/doc/fasta3/examples/seq/prio_atepa.aa
/usr/share/doc/fasta3/examples/seq/prot_test.lib
/usr/share/doc/fasta3/examples/seq/prot_test.lseg
/usr/share/doc/fasta3/examples/seq/prot_test_s.lseg
/usr/share/doc/fasta3/examples/seq/qrhuld.aa
/usr/share/doc/fasta3/examples/seq/titin_hum.aa
/usr/share/doc/fasta3/examples/seq/titin_hum.seq
/usr/share/doc/fasta3/examples/seq/vav_human.aa
/usr/share/doc/fasta3/examples/seq/xurt8c.aa
/usr/share/doc/fasta3/examples/seq/xurt8c.lc
/usr/share/doc/fasta3/examples/seq/xurtg.aa
/usr/share/doc/fasta3/examples/sql/README
/usr/share/doc/fasta3/examples/sql/create_seq_demo.sql
/usr/share/doc/fasta3/examples/sql/join_up50.pl
/usr/share/doc/fasta3/examples/sql/mysql_demo1.sql
/usr/share/doc/fasta3/examples/sql/mysql_demo_pv.sql
/usr/share/doc/fasta3/examples/sql/nr_to_sql.pl
/usr/share/doc/fasta3/examples/sql/pirpsd.sql
/usr/share/doc/fasta3/examples/sql/psql_demo.sql
/usr/share/doc/fasta3/examples/sql/psql_demo1.sql
/usr/share/doc/fasta3/examples/sql/psql_demo_pv.sql
/usr/share/fasta3/data/VTML_10.mat
/usr/share/fasta3/data/VTML_120.mat
/usr/share/fasta3/data/VTML_160.mat
/usr/share/fasta3/data/VTML_20.mat
/usr/share/fasta3/data/VTML_200.mat
/usr/share/fasta3/data/VTML_40.mat
/usr/share/fasta3/data/VTML_80.mat
/usr/share/fasta3/data/blosum45.mat
/usr/share/fasta3/data/blosum50.mat
/usr/share/fasta3/data/blosum62.mat
/usr/share/fasta3/data/blosum80.mat
/usr/share/fasta3/data/dna.mat
/usr/share/fasta3/data/idn_aa.mat
/usr/share/fasta3/data/md_10.mat
/usr/share/fasta3/data/md_20.mat
/usr/share/fasta3/data/md_40.mat
/usr/share/fasta3/data/pam120.mat
/usr/share/fasta3/data/pam250.mat
/usr/share/fasta3/data/rna.mat
/usr/share/fasta3/data/vtml160.mat
/usr/share/fasta3/misc/README
/usr/share/fasta3/misc/parse_m9.pl
/usr/share/fasta3/misc/res2R.pl
/usr/share/fasta3/misc/shuffle_embed.pl
/usr/share/fasta3/scripts/README
/usr/share/fasta3/scripts/README.scripts
/usr/share/fasta3/scripts/acc_examples
/usr/share/fasta3/scripts/ann_exons_all.pl
/usr/share/fasta3/scripts/ann_exons_ens.pl
/usr/share/fasta3/scripts/ann_exons_ncbi.pl
/usr/share/fasta3/scripts/ann_exons_up_sql.pl
/usr/share/fasta3/scripts/ann_exons_up_sql_www.pl
/usr/share/fasta3/scripts/ann_exons_up_www.pl
/usr/share/fasta3/scripts/ann_feats2ipr.pl
/usr/share/fasta3/scripts/ann_feats2ipr_e.pl
/usr/share/fasta3/scripts/ann_feats_up_sql.pl
/usr/share/fasta3/scripts/ann_feats_up_www2.pl
/usr/share/fasta3/scripts/ann_ipr_www.pl
/usr/share/fasta3/scripts/ann_pdb_cath.pl
/usr/share/fasta3/scripts/ann_pdb_vast.pl
/usr/share/fasta3/scripts/ann_pfam28.pl
/usr/share/fasta3/scripts/ann_pfam30_tmptbl.pl
/usr/share/fasta3/scripts/ann_pfam_sql.pl
/usr/share/fasta3/scripts/ann_pfam_sql.py
/usr/share/fasta3/scripts/ann_pfam_www.pl
/usr/share/fasta3/scripts/ann_pfam_www.py
/usr/share/fasta3/scripts/ann_script_list
/usr/share/fasta3/scripts/ann_upfeats_pfam_www_e.pl
/usr/share/fasta3/scripts/annot_blast_btop2.pl
/usr/share/fasta3/scripts/annot_blast_btop3.py
/usr/share/fasta3/scripts/annot_blast_btop4.py
/usr/share/fasta3/scripts/blastp_annot_cmd.sh
/usr/share/fasta3/scripts/blastp_cmd.sh
/usr/share/fasta3/scripts/color_defs.pl
/usr/share/fasta3/scripts/exp_up_ensg.pl
/usr/share/fasta3/scripts/expand_links.pl
/usr/share/fasta3/scripts/expand_refseq_isoforms.pl
/usr/share/fasta3/scripts/expand_uniref50.pl
/usr/share/fasta3/scripts/expand_up_isoforms.pl
/usr/share/fasta3/scripts/fasta_annot_cmd.sh
/usr/share/fasta3/scripts/get_genome_seq.py
/usr/share/fasta3/scripts/get_protein.py
/usr/share/fasta3/scripts/get_protein_sql.py
/usr/share/fasta3/scripts/get_protein_sql_www.py
/usr/share/fasta3/scripts/get_refseq.py
/usr/share/fasta3/scripts/get_uniprot.py
/usr/share/fasta3/scripts/get_up_prot_iso_sql.py
/usr/share/fasta3/scripts/lav2plt.pl
/usr/share/fasta3/scripts/lavplt_ps.pl
/usr/share/fasta3/scripts/lavplt_svg.pl
/usr/share/fasta3/scripts/links2sql.pl
/usr/share/fasta3/scripts/m8CBl_to_plot2.R
/usr/share/fasta3/scripts/m8_btop_msa.pl
/usr/share/fasta3/scripts/m9B_btop_msa.pl
/usr/share/fasta3/scripts/map_exon_coords.py
/usr/share/fasta3/scripts/merge_blast_btab.pl
/usr/share/fasta3/scripts/merge_fasta_btab.pl
/usr/share/fasta3/scripts/plot_domain2t.cgi
/usr/share/fasta3/scripts/relabel_domains.py
/usr/share/fasta3/scripts/rename_exons.py
/usr/share/fasta3/scripts/summ_domain_ident.pl
/usr/share/fasta3/scripts/test_ann_scripts.sh
/usr/share/fasta3/scripts/test_py.sh
/usr/share/man/man1/fasta36.1.gz
/usr/share/man/man1/fastf3.1.gz
/usr/share/man/man1/fasts3.1.gz
/usr/share/man/man1/map_db.1.gz
/usr/share/man/man1/prss3.1.gz
/usr/share/man/man1/ps_lav.1.gz