Man page - map_db(1)

Packages contains this manual

Package:  fasta3
apt-get install fasta3

Manuals in package:
• map_db(1)
• fasta36(1)
• prss3(1)
• ps_lav(1)
• fasts3(1)
• fastf3(1)
Documentations in package:
• fasta3

Manual

MAP_DB

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
BUGS
AUTHOR

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NAME

map_db - read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary (6) sequence database and produce the offsets necessary for efficient memory mapping.

SYNOPSIS

map_db [-n] filename | "filename libtype"

DESCRIPTION

map_db filename reads the sequence database in filename and produce a new file filename.xin with the offset information necessary for efficient memory mapping.

The programs in fasta version 32t08 can use memory mapped i/o to load sequence database files and read them efficiently. Memory mapping is used only if a " .xin " file is available. The " .xin " file is created by map_db .

In addition to map_db , list_db is available to display the database size, etc, and set of offsets calculated by map_db .

OPTIONS

-n

Read file as DNA database.

BUGS

AUTHOR

Bill Pearson
wrp@virginia.EDU

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