Man page - subread-fullscan(1)

Packages contains this manual

Package:  subread
apt-get install subread

Manuals in package:
• sublong(1)
• subread-buildindex(1)
• repair(1)
• subread-fullscan(1)
• subindel(1)
• propmapped(1)
• subjunc(1)
• subread-align(1)
Documentations in package:
• subread

Manual

SUBREAD-FULLSCAN

NAME
DESCRIPTION
AUTHOR

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NAME

subread-fullscan - toolkit for processing next-gen sequencing data

DESCRIPTION

subread-fullscan Version 2.0.4

This program scans the entire genome to find all high-similarity locations to

a specified read.

Usage:

./subread-fullscan [options] -i <index_name> <read_string>

Required arguments:
-i <string>

Base name of the index.

read_string

The read bases.

Optional arguments:
-m <float>

The minimum fraction of matched bases in the read, 0.8 by default

AUTHOR

This manpage was written by Alexandre Mestiashvili for the Debian distribution and
can be used for any other usage of the program.

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