Man page - subindel(1)

Packages contains this manual

Package:  subread
apt-get install subread

Manuals in package:
• sublong(1)
• subread-buildindex(1)
• repair(1)
• subread-fullscan(1)
• subindel(1)
• propmapped(1)
• subjunc(1)
• subread-align(1)
Documentations in package:
• subread

Manual

SUBINDEL

NAME
DESCRIPTION
Usage:
Example:
AUTHOR

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NAME

subindel - toolkit for processing next-gen sequencing data

DESCRIPTION

SubIndel: detect short and long indels

Usage:

subindel -i <SAM file> -g <subread index> -o <output VCF> {-d <expected fragment distance>} {-I <max indel length>} {--paired-end}

Example:

subindel -i my_paired_end_reads.SAM -g my_index -o my_result -d 300 -I 200 --paired-end

AUTHOR

This manpage was written by Alexandre Mestiashvili for the Debian distribution and
can be used for any other usage of the program.

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