Man page - showtree(1)

Packages contains this manual

Package: prime-phylo
apt-get install prime-phylo

Manuals in package:

Documentations in package:

prime-phylo

Manual

showtree

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXIT STATUS
URL
SEE ALSO

NAME

showtree - View and/or convert phylogenetic trees in the terminal.

SYNOPSIS

showtree [ OPTIONS ] [treefile ]

DESCRIPTION

View and/or convert phylogenetic trees in the terminal.

treefile is the filename of the for the file containing trees in PRIME format.

OPTIONS

--help

Display help (this text).

-V , --version

Print version and exit

-e , --show-edgetimes

Show edge times

-n , -show-nodetimes

Show node times

-b , --show-edgeweights

Show edge weights (i.e. branch lengths)

-x , --show-tot-edgetime

Show total edge time instead of tree

-y , --show-tot-edgeweight

Show total edge weight instead of tree

-c , --read-edge-times-after-colon

Read edge times after colon

-p , --convert-and-output-tree-in-prime-format

Convert and output tree in PRIME format

-i , --show-id

Show ID (only valid together with -p)

-S , --read-tree-from-stdin

Read tree from STDIN (no <treefile> nor <tree> needed)

-f , --format asciidrawing|prime|newick|simplenewick

The output format. Default is asciidrawing. Output formats:

newick - convert and output tree in NEWICK format

simplenewick - Simple newick format, no branch lengths. This also enables reading of unbalanced trees.

prime - prime format

asciidrawing - an ascii drawing

-t , --tree-number

Use the tree with this number. If not set all trees will be printed out.

-t , --tree-number

Use the tree with this number. If not set all trees will be printed out.

EXIT STATUS

	0		Successful program execution.
	1		Some error occurred

URL

The prime-phylo home page: http://prime.sbc.su.se