Man page - chainsaw(1)

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Package: prime-phylo
apt-get install prime-phylo

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prime-phylo

Manual

chainsaw

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXIT STATUS
URL
SEE ALSO

NAME

chainsaw - Cut a gene tree based on a reconciliation

SYNOPSIS

chainsaw [ OPTIONS ] reconciled-gene-tree species-tree

DESCRIPTION

reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.

species-tree is the species tree

OPTIONS

--help

Display help (this text).

-V , --version

Print version and exit

-g , --guest-tree-format primeOrHybrid|inputxml

The input format. Default is primeOrHybrid

-h , --host-tree-format primeOrHybrid|inputxml

The input format of the host tree. Default is primeOrHybrid

-x , --node-name=STRING

A named species node to cut at

-i , --node-id=INT

The numerical id of a species node to cut at

EXIT STATUS

	0		Successful program execution.
	1		Some error occurred

URL

The prime-phylo home page: http://prime.sbc.su.se