Man page - psort(1)

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Package: psortb
apt-get install psortb

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psort - bacterial localization prediction tool

psort [ -p|-n ] [ OPTIONS ] [ SEQFILE ]

Runs psort on the sequence file SEQFILE . If SEQFILE isn’t provided then sequences will be read from STDIN.
--help , -h

Displays usage information

--positive , -p

Gram positive bacteria

--negative , -n

Gram negative bacteria

--archaea , -a

Archaea

--cutoff , -c

Sets a cutoff value for reported results

--divergent , -d

Sets a cutoff value for the multiple localization flag

--matrix , -m

Specifies the path to the pftools installation. If not set, defaults to the value of the PSORT_PFTOOLS environment variable.

--format , -f

Specifies sequence format (default is FASTA)

--exact , -e

Skip SCLBLASTe (useful for batch runs of data against itself in SCLBLAST)

--output , -o

Specifies the format for the output (default is ’normal’ Value can be one of: terse, long or normal

--root , -r

Specify PSORT_ROOT for running local copies. If not set, defaults to the value of the PSORT_ROOT environment variable.

--server , -s

Specifies the PSort server to use

--verbose , -v

Be verbose while running

--x-skip-localization

--version

Print the version of PSortb

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.