Man page - gthfilestat(1)

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Package: genomethreader
apt-get install genomethreader

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GTHFILESTAT(1)

gthfilestat - show statistics about consensus spliced alignments

gthfilestat [option ...] [file ...]

Show statistics about spliced alignments in GenomeThreader output files containing intermediate results.

-minalignmentscore

set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxalignmentscore

set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00

-mincoverage

set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00

-maxcoverage

set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99

-v

be verbose default: no

-help

display help and exit

-version

display version information and exit