Man page - gthbssmbuild(1)

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Package: genomethreader
apt-get install genomethreader

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GTHBSSMBUILD(1)

gthbssmbuild - build splice site model

gthbssmbuild [option ...] genomic_file cDNA_file

Build a BSSM file from a directory tree containing the training data.

-bssmfile

specify name of BSSM file to store parameters in default: undefined

-datapath

specify root of species-specific training data directory tree default: undefined

-gtdonor

train GT donor model default: no

-gcdonor

train GC donor model default: no

-agacceptor

train AG acceptor model default: no

-gzip

use gzip’ed input files default: no

-help

display help and exit

-version

display version information and exit