Man page - density-score-by-residue(1)

Packages contains this manual

Package:  coot
apt-get install coot

Manuals in package:
• coot-available-comp-id(1)
• coot-fix-nomenclature-errors(1)
• findligand(1)
• coot-mini-rsr(1)
• density-score-by-residue(1)
• fix-nomenclature-errors(1)
• coot-make-shelx-restraints(1)
• findwaters(1)
• coot-bfactan(1)
• lidia(1)
• pyrogen(1)
• coot(1)
• coot-density-score-by-residue(1)
• coot-compare-dictionaries(1)
• coot-identify-protein(1)
• layla(1)
Documentations in package:
• coot

Manual

DENSITY-SCORE-BY-RESIDUE

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
AUTHOR

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NAME

density-score-by-residue - program to...

SYNOPSIS

density-score-by-residue

DESCRIPTION

density-score-by-residue is a part of the Coot suite of programs.

OPTIONS

These programs follow the usual GNU command line syntax, with long options starting with two dashes (-). A summary of options is included below.
--pdbin= file

Input PDB file name

--hklin= file

MTZ file containing structure factors

--f= label

label of MTZ file column containing structure factor amplitudes

--phi= label

label of MTZ file column containing structure factor phases

--weight=label

Label of weight column in MTZ file

--score-atoms

--cut

cut out badly scoring residues

--cut-level= level

Set (absolute) density level below which we can cut out residues

--pdbout= file

Output PDB file name

SEE ALSO

bfactan (1), coot (1), findligand (1), findwaters (1), fix-nomenclature-errors (1), lidia (1).

AUTHOR

density-score-by-residue is written by Paul Emsley.

This manual page was written by Morten Kjeldgaard <mok@bioxray.dk>

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