Man page - bp_generate_histogram(1)

Packages contains this manual

Package:  libbio-db-gff-perl
apt-get install libbio-db-gff-perl

Manuals in package:
• bp_meta_gff(1)
• bp_load_gff(1)
• bp_fast_load_gff(1)
• bp_generate_histogram(1)
• bp_bulk_load_gff(1)
• bp_genbank2gff(1)
Documentations in package:
• libbio-db-gff-perl

Manual

BP_GENERATE_HISTOGRAM

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
BUGS
SEE ALSO
AUTHOR

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NAME

bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features

SYNOPSIS

bp_generate_histogram.pl -d gadfly variation gene:curated

DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

OPTIONS

The following options are recognized:

Option Description
------ -----------
--dsn <dsn> Data source (default dbi:mysql:test)
--adaptor <adaptor> Schema adaptor (default dbi::mysqlopt)
--user <user> Username for mysql authentication
--pass <password> Password for mysql authentication
--aggregator <list> Comma-separated list of aggregators

BUGS

Please report them.

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER .txt for disclaimers of warranty.

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