Man page - bowtie2-inspect-l(1)

Packages contains this manual

Package:  bowtie2
apt-get install bowtie2

Manuals in package:
• bowtie2-build-s(1)
• bowtie2-build-l(1)
• bowtie2(1)
• bowtie2-align-l(1)
• bowtie2-inspect(1)
• bowtie2-inspect-l(1)
• bowtie2-build(1)
• bowtie2-inspect-s(1)
• bowtie2-align-s(1)
Documentations in package:
• bowtie2

Manual

BOWTIE2-INSPECT-L

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

---

NAME

bowtie2-inspect-l - extracts information from a bowtie2 index

SYNOPSIS

bowtie2-inspect [ options ] * <bt2_base>

DESCRIPTION

Bowtie 2 version 2.5.4 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/˜langmea)
<bt2_base>

bt2 filename minus trailing .1.bt2l/.2.bt2l

By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n , just prints names. With -s , just prints a summary of the index parameters and sequences.

OPTIONS

-a /--across <int>

Number of characters across in FASTA output (default: 60)

-n /--names

Print reference sequence names only

-s /--summary

Print summary incl. ref names, lengths, index properties

-o /--output

Save output to filename (default stdout)

-v /--verbose

Verbose output (for debugging)

-h /--help

print this and message quit

---