Man page - bowtie2-inspect(1)

Packages contains this manual

Package:  bowtie2
apt-get install bowtie2

Manuals in package:
• bowtie2-build-s(1)
• bowtie2-build-l(1)
• bowtie2(1)
• bowtie2-align-l(1)
• bowtie2-inspect(1)
• bowtie2-inspect-l(1)
• bowtie2-build(1)
• bowtie2-inspect-s(1)
• bowtie2-align-s(1)
Documentations in package:
• bowtie2

Manual

BOWTIE2-INSPECT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

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NAME

bowtie2-inspect - wrapper for bowtie2-inspect-* index

SYNOPSIS

bowtie2-inspect [ options ] * <bt2_base>

DESCRIPTION

Bowtie 2 version 2.5.4 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/˜langmea)
<bt2_base>

bt2 filename minus trailing .1.bt2/.2.bt2

By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n , just prints names. With -s , just prints a summary of the index parameters and sequences.

OPTIONS

--large-index

force inspection of the ’large’ index, even if a ’small’ one is present.

--debug

use the debug binary; slower, assertions enabled

--verbose

log the issued command

-a /--across <int>

Number of characters across in FASTA output (default: 60)

-n /--names

Print reference sequence names only

-s /--summary

Print summary incl. ref names, lengths, index properties

-o /--output

Save output to filename (default stdout)

-v /--verbose

Verbose output (for debugging)

-h /--help

print this and message quit

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