Man page - bamindex(1)
Packages contains this manual
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- bamauxmerge(1)
- bam12auxmerge(1)
- bamrank(1)
- bamfiltermc(1)
- fastaexplod(1)
- bammaskflags(1)
- bamfeaturecount(1)
- bamclipreinsert(1)
- bamadapterclip(1)
- bamreset(1)
- bamintervalcomment(1)
- bamflagsplit(1)
- bamindex(1)
- bamfilterheader(1)
- bamranksort(1)
- bamtofastq(1)
- bamauxsort(1)
- bamfilterheader2(1)
- bamsort(1)
apt-get install biobambam2
Manual
BAMINDEX
NAMESYNOPSIS
DESCRIPTION
AUTHOR
REPORTING BUGS
COPYRIGHT
NAME
bamindex - create index for BAM file
SYNOPSIS
bamindex [options]
DESCRIPTION
bamindex reads a BAM file from standard input and produces a BAM index (.bai) file for this BAM file on standard output.
verbose=<1>: Valid values are
|
1: |
print progress report on standard error |
|||
|
0: |
do not print progress report |
tmpfile=<filename>: set the prefix for temporary file names. By default temporary files are created in the current directory.
AUTHOR
Written by German Tischler.
REPORTING BUGS
Report bugs to <germant@miltenyibiotec.de>
COPYRIGHT
Copyright ©
2009-2013 German Tischler, © 2011-2013 Genome Research
Limited. License GPLv3+: GNU GPL version 3
<http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and
redistribute it. There is NO WARRANTY, to the extent
permitted by law.