Man page - bamindex(1)
Packages contas this manual
- bammarkduplicates2(1)
- bam12strip(1)
- filtergtf(1)
- bamrecalculatecigar(1)
- bamadapterclip(1)
- bamfilterheader(1)
- bamintervalcomment(1)
- normalisefasta(1)
- bamtagconversion(1)
- bamchecksort(1)
- bammaskflags(1)
- bam12split(1)
- bamauxmerge(1)
- bamfixmateinformation(1)
- bammarkduplicatesopt(1)
- bamdownsamplerandom(1)
- bamflagsplit(1)
- bamsplit(1)
- bamreset(1)
- bamzztoname(1)
- bamvalidate(1)
- bamindex(1)
- bamrank(1)
- bamadapterfind(1)
- bamseqchksum(1)
- bamalignfrac(1)
- bamstreamingmarkduplicates(1)
- bam12auxmerge(1)
- bamranksort(1)
- bammerge(1)
- bamconsensus(1)
- bamsort(1)
- bamauxsort(1)
- bammarkduplicates(1)
- bamsplitdiv(1)
- bamsormadup(1)
- bamcollate2(1)
- bamauxmerge2(1)
- bamfiltermc(1)
- bamclipreinsert(1)
- fastqtobam(1)
- bamrecompress(1)
- bamfilterheader2(1)
- bamfeaturecount(1)
- bamfillquery(1)
- bamfilteraux(1)
- bamfilterrg(1)
- bamfilterflags(1)
- fastaexplod(1)
- bambisect(1)
- bamtofastq(1)
- bamcat(1)
- bammdnm(1)
Package: biobambam2
apt-get install biobambam2
apt-get install biobambam2
Manuals in package:
Documentations in package:
Manual
| BAMINDEX(1) | General Commands Manual | BAMINDEX(1) |
NAME
bamindex - create index for BAM file
SYNOPSIS
bamindex [options]
DESCRIPTION
bamindex reads a BAM file from standard input and produces a BAM index (.bai) file for this BAM file on standard output.
verbose=<1>: Valid values are
- 1:
- print progress report on standard error
- 0:
- do not print progress report
tmpfile=<filename>: set the prefix for temporary file names. By default temporary files are created in the current directory.
AUTHOR
Written by German Tischler.
REPORTING BUGS
Report bugs to <germant@miltenyibiotec.de>
COPYRIGHT
Copyright © 2009-2013 German Tischler, © 2011-2013
Genome Research Limited. License GPLv3+: GNU GPL version 3
<http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it. There is NO
WARRANTY, to the extent permitted by law.
| July 2013 | BIOBAMBAM |