Package - tvc

Package:  tvc
apt-get install tvc
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5+b3_amd64.deb (Size: 1.1MiB)

PropertyValue
Packagetvc
Sourcetvc (5.0.3+git20151221.80e144e+dfsg-5)
Version5.0.3+git20151221.80e144e+dfsg-5+b3
Installed-Size3505
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibarmadillo14 (>= 1:14.0.1+dfsg), libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.38), libdisorder0 (>= 0.0.2), libgcc-s1 (>= 3.0), libjsoncpp26 (>= 1.9.6), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), python3
Descriptiongenetic variant caller for Ion Torrent sequencing platforms
Description-md5a03b342acfe36935ca1e8e84f12de711
Homepagehttp://ioncommunity.thermofisher.com
Sectionscience
Priorityoptional
Filenamepool/main/t/tvc/tvc_5.0.3+git20151221.80e144e+dfsg-5+b3_amd64.deb
Size1114580
MD5sum778e6aef7937d4e4d65a8985a03be824
SHA256a74951635ebc9642334148e1c995648c17946aa0685795b47d2afc2426e65efc

Files in package

  • /usr/bin/tvc
  • /usr/bin/tvcassembly
  • /usr/bin/tvcutils
  • /usr/bin/variant_caller_pipeline.py
  • /usr/share/TVC/examples/example1/expected/TSVC_variants.vcf
  • /usr/share/TVC/examples/example1/expected/small_variants.vcf
  • /usr/share/TVC/examples/example1/reference.dict
  • /usr/share/TVC/examples/example1/reference.fasta
  • /usr/share/TVC/examples/example1/reference.fasta.fai
  • /usr/share/TVC/examples/example1/test.bam
  • /usr/share/TVC/examples/example1/test.bam.bai
  • /usr/share/TVC/examples/example1/test.bed
  • /usr/share/TVC/examples/example1/test_merged_plain.bed
  • /usr/share/TVC/examples/example1/test_original.bed
  • /usr/share/TVC/examples/example1/test_unmerged_detail.bed
  • /usr/share/TVC/pluginMedia/parameter_sets/ampliseq_germline_lowstringency_pgm_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/ampliseq_somatic_lowstringency_pgm_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_germline_lowstringency_p1_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/ampliseqexome_somatic_lowstringency_p1_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/ocp_somatic_lowstringency_pgm_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/pgx4_germline_lowstringency_pgm_parameters.json
  • /usr/share/TVC/pluginMedia/parameter_sets/targetseq_germline_lowstringency_p1_parameters.json
  • /usr/share/TVC/sse/ampliseqexome_germline_p1_hiq_motifset.txt
  • /usr/share/TVC/sse/motifset.txt
  • /usr/share/doc/tvc/README.Debian
  • /usr/share/doc/tvc/changelog.Debian.amd64.gz
  • /usr/share/doc/tvc/changelog.Debian.gz
  • /usr/share/doc/tvc/copyright
  • /usr/share/lintian/overrides/tvc