Package - trinityrnaseq-examples

Package: trinityrnaseq-examples
apt-get install trinityrnaseq-examples

Documentations in package:

trinityrnaseq-examples

Primary informations

Download package: http://deb.debian.org/debian/pool/main/t/trinityrnaseq/trinityrnaseq-examples_2.15.2+dfsg-1_amd64.deb (Size: 286.0MiB)

Property	Value
Package	trinityrnaseq-examples
Source	trinityrnaseq
Version	2.15.2+dfsg-1
Installed-Size	449931
Maintainer	Debian Med Packaging Team
Architecture	amd64
Depends	perl:any, r-base-core
Recommends	trinityrnaseq
Description	RNA-Seq De novo Assembly common example and testing files
Description-md5	ed2dc144f88f410c79f957673eea79fb
Homepage	https://github.com/trinityrnaseq/trinityrnaseq
Section	science
Priority	optional
Filename	pool/main/t/trinityrnaseq/trinityrnaseq-examples_2.15.2+dfsg-1_amd64.deb
Size	299875020
MD5sum	f97b9156852cee2ae4ab779d74db714a
SHA256	a2fae2f2ac7cc5c916fb5cc0a5d8ed68e0a55030bccab984768b044884eff40f

Files in package

/usr/lib/trinityrnaseq/sample_data
/usr/share/doc/trinityrnaseq-examples/changelog.Debian.gz
/usr/share/doc/trinityrnaseq-examples/changelog.gz
/usr/share/doc/trinityrnaseq-examples/copyright
/usr/share/trinityrnaseq/sample_data/Makefile
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/Makefile
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/README
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/align_reads_via_bowtie.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/bowtie2.sam.aligned.bam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.IGV.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex01/ex01.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex02.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/ex2.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/example2.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex02/region2.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex03.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/ex3.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/example3.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex03/region3.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex04.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/ex4.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/example4.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex04/region4.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/clean.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex05.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/ex5.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/example5.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.Bfly.dot
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.bed
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/region5.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.clean.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/runMe.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex06.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/ex6.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/example6.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex06/region6.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex07.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/ex7.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/example7.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex07/region7.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex08.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/ex8.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/example8.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex08/region8.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex09.refSeq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.left.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/ex9.reads.right.fq
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/example9.png
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/region9.sam.adj
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex09/runMe.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/refSeqs.fa.gene_trans_map
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/cleanme.pl
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/longReads.fa
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.diff_kmer_length.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe.noSeqtk.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_CuffFly.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_PasaFly.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_as_DS.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_bowtie_components.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_docker.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_full_cleanup.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_include_long_reads.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_cleanup.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_para_iworm.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_salmon_no_cleanup.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_no_symlinks.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_parallel_iworm_assembly.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_piecemeal.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_trin_complete.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_bowtie2.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_my_ramdisk.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_use_workdir.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_LSF.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_SGE.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_wSuperReads.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_w_monitoring.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalization.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_with_qual_trimming_and_normalize_libs_separately.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.min_kmer_cov_3.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_PE_samples_file.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_SE_samples_file.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__run_abundance_estimation_include_antisense.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe.singleFQ.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_NO_normalization.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_include_normalization.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_lenient_path_extension.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_with_jaccard_clip.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/misc_run_tests/runMe_no_qualTrim.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fa.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.left.fq.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fa.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads.right.fq.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.left.fq.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/reads2.right.fq.gz
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/runMe.sh
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.PE.txt
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/samples.SE.txt
/usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/test_FL.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/README.md
/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/both.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/inchworm.K25.L25.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/iworm_scaffolds.txt.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/__regression_tests/test_GraphFromFasta/runMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.ForRev_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.left.stripped.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Assembly_DiffReadFormattings/reads.right.stripped.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_ds.10k.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_hs.10k.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_log.10k.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Sp_plat.10k.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gene_trans_map
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chromosome.iit
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.chrsubset
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.contig.iit
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomebits128
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.genomecomp
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64meta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133offsets64strm
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.ref133positions
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildexc
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sachildguide1024
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64meta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.saindex64strm
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpchilddc
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpexc
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.salcpguide1024
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.sarray
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/Trinity.fasta.gmap/Trinity.fasta.gmap.version
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.Trinity_trans.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/candidate.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/gsnap.cSorted.bam.bai
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/reads2.right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DATA/salmon-quasi-trans.isoform.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.TPM.not_cross_norm
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/Trinity_trans.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/notes
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/test_PtR_PCA
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Candida_example/validate_results.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinity_genes.lengths
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/Trinotate_report.xls.gene_ontology
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/trans.seq.lengths.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DE_analysis/Spombe_example/validate_results.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/cleanMe.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/compare_dexseq_results.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep1_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep1_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep2_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep2_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep3_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sA_rep3_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep1_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep1_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep2_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep2_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep3_1.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/data/sB_rep3_2.fastq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/mini.Trinity_fmt.fasta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/minigenome.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/minigenome.gtf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/plot_comparison.Rscript
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/runMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_DTU/test_for_cor.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/acanth.E-inputs.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/acanth.ExN50.stats
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/axolotl.by-gene.E-inputs.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/axolotl.by-transcript.E-inputs.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/axolotl.gene.ExN50.stats
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/axolotl.transcript.ExN50.stats
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/estimate_transcript_numbers_by_expression.Rmd
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/mouse.50M.ExN50.stats
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_ExN50/more_examples/mouse50M.E-inputs.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/Rplots.pdf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/__runGOseq.R
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/diauxic_shift_induced.GOseq.depleted
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/diauxic_shift_induced.GOseq.enriched
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/heatshock.GOseq.depleted
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/heatshock.GOseq.enriched
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/Trinity.gene.lengths
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/Trinity_genes.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/Trinity_genes.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/Trinotate_report.xls.gene_ontology
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/contrasts.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/runMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_analyzeDiffExprWithGOseq/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinity.background
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinity.seq_lengths
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls.trans.gene_ontology
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/ds_induced_vs_log.factors
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/hs_induced_vs_log.factors
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/runMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/from_enrichnet.org/Cancer_genes_Futreal2004.ids
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/from_enrichnet.org/Parkinsons_disease_Phenopedia2011.ids
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/test_GOplot/EC.david
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/test_GOplot/EC.genelist
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/test_GOplot/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOplot/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOplot/data/Trinity_genes.counts.matrix.log_growth_vs_heatshock.edgeR.DE_results.P0.001_C2.DE.subset
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOplot/data/Trinity_genes.counts.matrix.log_growth_vs_heatshock.edgeR.DE_results.P0.001_C2.DE.subset.GOseq.enriched
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GOplot/data/Trinotate_report.xls.gene_ontology
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/SP2.annot.bed.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/SP2.chr.SE.sam.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/SP2.chr.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/SP2.chr.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/chr17.illumina.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/chr17.pbio.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/mm9chr17.annotation.bed.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/mm9chr17.fasta.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/mm9chr17.tophat.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/__run_genome-guided_Trinity_use_existing_bam.use_LSF.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/__run_genome-guided_Trinity_use_existing_bam.use_PBS.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/__run_genome-guided_Trinity_use_existing_bam.use_SGE.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/run_Schizo_TrinityGG.SE.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/run_Schizo_TrinityGG.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/run_genome-guided_Trinity.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/old/run_mouse_TrinityGG.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/run_Schizo_TrinityGG_jaccard_clip.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/run_chr17_GG_wLongreads.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/run_genome-guided_Trinity_use_existing_bam.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/run_small_GG_mutliScaff_test.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/top100k.Left.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/top100k.Right.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/top100k.genome.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_GenomeGuidedTrinity/transAligns.cSorted.bam
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Glimma/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Glimma/my.DE_results
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Glimma/my.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Glimma/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/test_PE_normalization.mult_read_sets.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/test_PE_normalization.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/test_PE_normalization.w_base_cov_stats.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_InSilicoReadNormalization/test_SE_normalization.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Inchworm/jellyfish.kmers.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_Inchworm/runMe_MPI.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_LongReads/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_LongReads/longreads.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_LongReads/reads_1.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_LongReads/reads_2.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_PtR/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_PtR/candidate.Trinity_trans.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_PtR/candidate.Trinity_trans.counts.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_PtR/candidate.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/cleanMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_flush/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_flush/S-Lap3.flush.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_flush/st.fasta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_flush/st.gtf.expected_result
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_flush/st.gtf.expected_result.sort
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_fstExt/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_fstExt/S-Lap3.fstExt.fa
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_fstExt/st.gtf.expected_result
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_fstExt/st.gtf.expected_result.sort
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/indiv_tests/S-Lap3_fstExt/st.gtf.expected_result.sort.alt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/mouse.10M.altsplice.trin.fa.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_SuperTranscript/runMe.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TPM_weighted_gene_length/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TPM_weighted_gene_length/Trinity.fasta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TPM_weighted_gene_length/Trinity.fasta.gene_trans_map
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TPM_weighted_gene_length/Trinity.fasta.seqlens
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TPM_weighted_gene_length/rsem.isoform.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TissueSpecificityGraph/DE_results.tar.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TissueSpecificityGraph/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_TissueSpecificityGraph/transcripts.TMM.fpkm.avg_reps.matrix.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/samples_file.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/small_1.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/small_2.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/supertranscripts.fasta
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/supertranscripts.gtf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/whitefly_rnaseq_1.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_VariantCalling/whitefly_rnaseq_2.fq.gz
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/PAIRED_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/drosoph_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/mouse_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_denovo.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/schizo_ref.samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Drosoph_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Mouse_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_denovo.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/misc_tests/test_Schizo_ref.sh
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/SINGLE_END_ABUNDANCE_ESTIMATION_via_samples_file_direct/samples.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/align_and_estimate_tester.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/log.out
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/pairs.Rscript
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_align_and_estimate_abundance/plot_paired_comparisons.Rscript
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_filter_low_expr/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_filter_low_expr/kallisto-trans.TMM.EXPR.matrix
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_full_edgeR_pipeline/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_full_edgeR_pipeline/cleanme.pl
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_full_edgeR_pipeline/samples_n_reads_decribed.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_profiling_report/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_profiling_report/ex1/collectl.dat
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_profiling_report/ex2/collectl.dat
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/Makefile
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/gene_to_trans.txt
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/plot_comparison.Rscript
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/quant_files.list
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188021/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188021/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188088/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188088/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188288/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188288/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188297/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188297/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188329/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188329/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188356/cmd_info.json
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/salmon/ERR188356/quant.sf
/usr/share/trinityrnaseq/trinity_ext_sample_data/test_tximport/tximport_compare.Rscript