Package - transdecoder

Package: transdecoder
apt-get install transdecoder

Documentations in package:

transdecoder

Primary informations

Download package: http://deb.debian.org/debian/pool/main/t/transdecoder/transdecoder_5.7.1-2_all.deb (Size: 200.5KiB)

Property	Value
Package	transdecoder
Version	5.7.1-2
Installed-Size	666
Maintainer	Debian Med Packaging Team
Architecture	all
Depends	perl:any, liburi-perl, r-base-core, python3
Recommends	r-cran-ggplot2, r-bioc-seqlogo, hmmer
Suggests	transdecoder-doc
Description	find coding regions within RNA transcript sequences
Description-md5	7e0297054e6db1517322f3983f80b94c
Homepage	https://transdecoder.github.io/
Section	science
Priority	optional
Filename	pool/main/t/transdecoder/transdecoder_5.7.1-2_all.deb
Size	205292
MD5sum	23ce96a3cae7906459c7ef5e1fc34116
SHA256	5614216f0c833cd1556d9db44b376a3a3dffc8de2385575f3fc71ae4bf65ad20

Files in package

/usr/bin/TransDecoder.LongOrfs
/usr/bin/TransDecoder.Predict
/usr/lib/transdecoder/PerlLib/DelimParser.pm
/usr/lib/transdecoder/PerlLib/Fasta_reader.pm
/usr/lib/transdecoder/PerlLib/Fasta_retriever.pm
/usr/lib/transdecoder/PerlLib/GFF3_utils2.pm
/usr/lib/transdecoder/PerlLib/GTF.pm
/usr/lib/transdecoder/PerlLib/GTF_utils2.pm
/usr/lib/transdecoder/PerlLib/Gene_obj.pm
/usr/lib/transdecoder/PerlLib/Longest_orf.pm
/usr/lib/transdecoder/PerlLib/Nuc_translator.pm
/usr/lib/transdecoder/PerlLib/Overlap_piler.pm
/usr/lib/transdecoder/PerlLib/PWM.pm
/usr/lib/transdecoder/PerlLib/Pipeliner.pm
/usr/lib/transdecoder/PerlLib/Process_cmd.pm
/usr/lib/transdecoder/PerlLib/overlapping_nucs.ph
/usr/lib/transdecoder/TransDecoder.LongOrfs
/usr/lib/transdecoder/TransDecoder.Predict
/usr/lib/transdecoder/util/PWM/README.md
/usr/lib/transdecoder/util/PWM/__deprecated/build_atgPWM.pl
/usr/lib/transdecoder/util/PWM/__deprecated/build_pwm.pl
/usr/lib/transdecoder/util/PWM/__deprecated/score_atgPWM.pl
/usr/lib/transdecoder/util/PWM/build_atgPWM_+-.pl
/usr/lib/transdecoder/util/PWM/compute_AUC.pl
/usr/lib/transdecoder/util/PWM/deplete_feature_noise.pl
/usr/lib/transdecoder/util/PWM/feature_scores_to_ROC.pl
/usr/lib/transdecoder/util/PWM/feature_scoring.+-.pl
/usr/lib/transdecoder/util/PWM/make_seqLogo.Rscript
/usr/lib/transdecoder/util/PWM/plot_ROC.Rscript
/usr/lib/transdecoder/util/PWM/simulate_feature_seq_from_PWM.pl
/usr/lib/transdecoder/util/__pwm_tests/cleanMe.sh
/usr/lib/transdecoder/util/__pwm_tests/longest_orfs.cds.top_longest_5000.nr80.gz
/usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz
/usr/lib/transdecoder/util/__pwm_tests/runMe.sh
/usr/lib/transdecoder/util/bin/.hidden
/usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl
/usr/lib/transdecoder/util/compute_base_probs.pl
/usr/lib/transdecoder/util/exclude_similar_proteins.pl
/usr/lib/transdecoder/util/fasta_prot_checker.pl
/usr/lib/transdecoder/util/ffindex_resume.pl
/usr/lib/transdecoder/util/gene_list_to_gff.pl
/usr/lib/transdecoder/util/get_FL_accs.pl
/usr/lib/transdecoder/util/get_longest_ORF_per_transcript.pl
/usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl
/usr/lib/transdecoder/util/gff3_file_to_bed.pl
/usr/lib/transdecoder/util/gff3_file_to_proteins.pl
/usr/lib/transdecoder/util/gff3_gene_to_gtf_format.pl
/usr/lib/transdecoder/util/gtf_genome_to_cdna_fasta.pl
/usr/lib/transdecoder/util/gtf_to_alignment_gff3.pl
/usr/lib/transdecoder/util/gtf_to_bed.pl
/usr/lib/transdecoder/util/misc/__init__.py
/usr/lib/transdecoder/util/misc/get_FP_FN_scores.py
/usr/lib/transdecoder/util/misc/plot_indiv_seq_likelihood_profile.py
/usr/lib/transdecoder/util/misc/rpart_scores.Rscript
/usr/lib/transdecoder/util/misc/select_TD_orfs.py
/usr/lib/transdecoder/util/nr_ORFs_gff3.pl
/usr/lib/transdecoder/util/pfam_mpi.pbs
/usr/lib/transdecoder/util/pfam_runner.pl
/usr/lib/transdecoder/util/refine_gff3_group_iso_strip_utrs.pl
/usr/lib/transdecoder/util/refine_hexamer_scores.pl
/usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl
/usr/lib/transdecoder/util/score_CDS_likelihood_all_6_frames.pl
/usr/lib/transdecoder/util/select_best_ORFs_per_transcript.pl
/usr/lib/transdecoder/util/seq_n_baseprobs_to_loglikelihood_vals.pl
/usr/lib/transdecoder/util/start_codon_refinement.pl
/usr/lib/transdecoder/util/train_start_PWM.pl
/usr/lib/transdecoder/util/uri_unescape.pl
/usr/share/doc/transdecoder/changelog.Debian.gz
/usr/share/doc/transdecoder/changelog.gz
/usr/share/doc/transdecoder/copyright