Package - tombo

Package:  tombo
apt-get install tombo
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/t/tombo/tombo_1.5.1-7+b2_amd64.deb (Size: 439.7KiB)

PropertyValue
Packagetombo
Sourcetombo (1.5.1-7)
Version1.5.1-7+b2
Installed-Size1491
MaintainerDebian Med Packaging Team
Architectureamd64
Dependspython3-h5py, python3-mappy, python3-numpy, python3-packaging, python3-scipy, python3-tqdm, python3 (<< 3.14), python3 (>= 3.13~), python3-numpy2-abi0 | python3-numpy-abi9, python3:any, libc6 (>= 2.29)
Recommendspython3-pyfaidx, python3-rpy2
Descriptionidentification of modified nucleotides from raw nanopore sequencing data
Description-md584c504e484d17c5f8775246805197485
Homepagehttps://github.com/nanoporetech/tombo
Sectionscience
Priorityoptional
Filenamepool/main/t/tombo/tombo_1.5.1-7+b2_amd64.deb
Size450204
MD5sum22df85ab285ceb000f504a72df95658a
SHA25681ca149dab189e43c1984033d8ee17ba382514aa3da4dc62e18393a200077829

Files in package

  • /usr/bin/tombo
  • /usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R
  • /usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R
  • /usr/lib/python3/dist-packages/tombo/__init__.py
  • /usr/lib/python3/dist-packages/tombo/__main__.py
  • /usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-313-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx
  • /usr/lib/python3/dist-packages/tombo/_c_helper.cpython-313-x86_64-linux-gnu.so
  • /usr/lib/python3/dist-packages/tombo/_c_helper.pyx
  • /usr/lib/python3/dist-packages/tombo/_default_parameters.py
  • /usr/lib/python3/dist-packages/tombo/_event_resquiggle.py
  • /usr/lib/python3/dist-packages/tombo/_filter_reads.py
  • /usr/lib/python3/dist-packages/tombo/_option_parsers.py
  • /usr/lib/python3/dist-packages/tombo/_plot_commands.py
  • /usr/lib/python3/dist-packages/tombo/_preprocess.py
  • /usr/lib/python3/dist-packages/tombo/_text_output_commands.py
  • /usr/lib/python3/dist-packages/tombo/_version.py
  • /usr/lib/python3/dist-packages/tombo/resquiggle.py
  • /usr/lib/python3/dist-packages/tombo/tombo_helper.py
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
  • /usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model
  • /usr/lib/python3/dist-packages/tombo/tombo_stats.py
  • /usr/share/doc/tombo/changelog.Debian.amd64.gz
  • /usr/share/doc/tombo/changelog.Debian.gz
  • /usr/share/doc/tombo/copyright
  • /usr/share/man/man1/tombo.1.gz
  • /usr/share/python3/runtime.d/tombo.rtupdate
  • /usr/share/tombo/scripts/debug_bandwidth.R
  • /usr/share/tombo/scripts/debug_est_alt.R
  • /usr/share/tombo/scripts/debug_params.R
  • /usr/share/tombo/scripts/dump_per_read_statistics.py
  • /usr/share/tombo/scripts/outlier_robust_llr.R
  • /usr/share/tombo/scripts/plot_correction.py
  • /usr/share/tombo/scripts/plot_multi_correction.py
  • /usr/share/tombo/scripts/plot_single_read.py
  • /usr/share/tombo/scripts/test_beta_priors.R