Package - tnseq-transit
Primary informations
Download package: http://deb.debian.org/debian/pool/main/t/tnseq-transit/tnseq-transit_3.3.12-1_amd64.deb (Size: 16.8MiB)| Property | Value |
|---|---|
| Package | tnseq-transit |
| Version | 3.3.12-1 |
| Installed-Size | 98383 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Replaces | transit |
| Provides | transit |
| Depends | python3-matplotlib, python3-numpy, python3-pil, python3-pubsub, python3-scipy, python3-sklearn, python3-statsmodels, python3-wheel, python3-wxgtk4.0, python3:any, bwa |
| Breaks | transit |
| Description | statistical calculations of essentiality of genes or genomic regions |
| Description-md5 | ed6ccc42fdb3924f7848894e28b09ade |
| Homepage | http://saclab.tamu.edu/essentiality/transit/ |
| Section | science |
| Priority | optional |
| Filename | pool/main/t/tnseq-transit/tnseq-transit_3.3.12-1_amd64.deb |
| Size | 17574040 |
| MD5sum | 4dfdc20f4bb6eefa1d21cb1379b4a949 |
| SHA256 | e339a6d243e8dc13cf761a01e62f44f70c389e8e716d8c16fa5a873c8d69a8c5 |
Files in package
- /usr/bin/transit
- /usr/bin/transit-tpp
- /usr/lib/python3/dist-packages/pytpp/__init__.py
- /usr/lib/python3/dist-packages/pytpp/__main__.py
- /usr/lib/python3/dist-packages/pytpp/tpp_gui.py
- /usr/lib/python3/dist-packages/pytpp/tpp_tools.py
- /usr/lib/python3/dist-packages/pytransit/DejaVuSans.ttf
- /usr/lib/python3/dist-packages/pytransit/__init__.py
- /usr/lib/python3/dist-packages/pytransit/__main__.py
- /usr/lib/python3/dist-packages/pytransit/analysis/CGI.py
- /usr/lib/python3/dist-packages/pytransit/analysis/__init__.py
- /usr/lib/python3/dist-packages/pytransit/analysis/anova.py
- /usr/lib/python3/dist-packages/pytransit/analysis/base.py
- /usr/lib/python3/dist-packages/pytransit/analysis/binomial.py
- /usr/lib/python3/dist-packages/pytransit/analysis/corrplot.py
- /usr/lib/python3/dist-packages/pytransit/analysis/example.py
- /usr/lib/python3/dist-packages/pytransit/analysis/gi.py
- /usr/lib/python3/dist-packages/pytransit/analysis/griffin.py
- /usr/lib/python3/dist-packages/pytransit/analysis/gumbel.py
- /usr/lib/python3/dist-packages/pytransit/analysis/heatmap.py
- /usr/lib/python3/dist-packages/pytransit/analysis/hmm.py
- /usr/lib/python3/dist-packages/pytransit/analysis/norm.py
- /usr/lib/python3/dist-packages/pytransit/analysis/normalize.py
- /usr/lib/python3/dist-packages/pytransit/analysis/pathway_enrichment.py
- /usr/lib/python3/dist-packages/pytransit/analysis/rankproduct.py
- /usr/lib/python3/dist-packages/pytransit/analysis/resampling.py
- /usr/lib/python3/dist-packages/pytransit/analysis/tn5gaps.py
- /usr/lib/python3/dist-packages/pytransit/analysis/tnseq_stats.py
- /usr/lib/python3/dist-packages/pytransit/analysis/ttnfitness.py
- /usr/lib/python3/dist-packages/pytransit/analysis/utest.py
- /usr/lib/python3/dist-packages/pytransit/analysis/zinb.py
- /usr/lib/python3/dist-packages/pytransit/convert/__init__.py
- /usr/lib/python3/dist-packages/pytransit/convert/base.py
- /usr/lib/python3/dist-packages/pytransit/convert/gff_to_prot_table.py
- /usr/lib/python3/dist-packages/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt
- /usr/lib/python3/dist-packages/pytransit/data/CGI/RIF_D1_combined_counts.txt
- /usr/lib/python3/dist-packages/pytransit/data/CGI/samples_metadata.txt
- /usr/lib/python3/dist-packages/pytransit/data/CGI/sgRNA_info.txt
- /usr/lib/python3/dist-packages/pytransit/data/CGI/uninduced_ATC_counts.txt
- /usr/lib/python3/dist-packages/pytransit/data/COG_roles.dat
- /usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs-3-11-18.txt
- /usr/lib/python3/dist-packages/pytransit/data/GO_associated_Rvs.csv
- /usr/lib/python3/dist-packages/pytransit/data/GO_term_names.dat
- /usr/lib/python3/dist-packages/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt
- /usr/lib/python3/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv
- /usr/lib/python3/dist-packages/pytransit/data/H37Rv_COG_roles.dat
- /usr/lib/python3/dist-packages/pytransit/data/H37Rv_GO_terms.txt
- /usr/lib/python3/dist-packages/pytransit/data/H37Rv_sanger_roles.dat
- /usr/lib/python3/dist-packages/pytransit/data/README.md
- /usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
- /usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
- /usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
- /usr/lib/python3/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
- /usr/lib/python3/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat
- /usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
- /usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
- /usr/lib/python3/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
- /usr/lib/python3/dist-packages/pytransit/data/iron_combined_wig4.txt
- /usr/lib/python3/dist-packages/pytransit/data/iron_samples_metadata.txt
- /usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg.txt
- /usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_covar.txt
- /usr/lib/python3/dist-packages/pytransit/data/samples_metadata_cg_interactions.txt
- /usr/lib/python3/dist-packages/pytransit/data/sanger_roles.dat
- /usr/lib/python3/dist-packages/pytransit/data/smeg_COG_roles.dat
- /usr/lib/python3/dist-packages/pytransit/data/smeg_GO_terms.txt
- /usr/lib/python3/dist-packages/pytransit/draw_trash.py
- /usr/lib/python3/dist-packages/pytransit/export/__init__.py
- /usr/lib/python3/dist-packages/pytransit/export/base.py
- /usr/lib/python3/dist-packages/pytransit/export/combined_wig.py
- /usr/lib/python3/dist-packages/pytransit/export/igv.py
- /usr/lib/python3/dist-packages/pytransit/export/mean_counts.py
- /usr/lib/python3/dist-packages/pytransit/export/prot_table.py
- /usr/lib/python3/dist-packages/pytransit/fileDisplay.py
- /usr/lib/python3/dist-packages/pytransit/generic_tools/__init__.py
- /usr/lib/python3/dist-packages/pytransit/generic_tools/file_system_py.py
- /usr/lib/python3/dist-packages/pytransit/genomes/BCG.fna
- /usr/lib/python3/dist-packages/pytransit/genomes/BCG.prot_table
- /usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.fna
- /usr/lib/python3/dist-packages/pytransit/genomes/H37Rv.prot_table
- /usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.fna
- /usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD.prot_table
- /usr/lib/python3/dist-packages/pytransit/genomes/H37RvBD_mod3.prot_table
- /usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.fna
- /usr/lib/python3/dist-packages/pytransit/genomes/H37RvMA2.prot_table
- /usr/lib/python3/dist-packages/pytransit/genomes/genomes.html
- /usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.fna
- /usr/lib/python3/dist-packages/pytransit/genomes/mc2_155_tamu.prot_table
- /usr/lib/python3/dist-packages/pytransit/images.py
- /usr/lib/python3/dist-packages/pytransit/norm_tools.py
- /usr/lib/python3/dist-packages/pytransit/qcDisplay.py
- /usr/lib/python3/dist-packages/pytransit/stat_tools.py
- /usr/lib/python3/dist-packages/pytransit/tnseq_tools.py
- /usr/lib/python3/dist-packages/pytransit/transit_gui.py
- /usr/lib/python3/dist-packages/pytransit/transit_tools.py
- /usr/lib/python3/dist-packages/pytransit/trash.py
- /usr/lib/python3/dist-packages/pytransit/view_trash.py
- /usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/PKG-INFO
- /usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/dependency_links.txt
- /usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/entry_points.txt
- /usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/requires.txt
- /usr/lib/python3/dist-packages/transit1-3.3.12.egg-info/top_level.txt
- /usr/share/doc/tnseq-transit/README.Debian
- /usr/share/doc/tnseq-transit/changelog.Debian.gz
- /usr/share/doc/tnseq-transit/changelog.gz
- /usr/share/doc/tnseq-transit/copyright
- /usr/share/man/man1/transit-tpp.1.gz
- /usr/share/man/man1/transit.1.gz