Package - stacks

Package:  stacks
apt-get install stacks
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/s/stacks/stacks_2.68+dfsg-2_amd64.deb (Size: 1.2MiB)

PropertyValue
Packagestacks
Version2.68+dfsg-2
Installed-Size6161
MaintainerDebian Med Packaging Team
Architectureamd64
Providesstacks-web
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3t64 (>= 1.17), libstdc++6 (>= 14), zlib1g (>= 1:1.2.6), samtools, libdbi-perl, bsdextrautils, python3
Recommendslibspreadsheet-writeexcel-perl, littler
Suggestsgdb
Descriptionpipeline for building loci from short-read DNA sequences
Description-md534654ddbf6119f78f131bb33b98f2f93
Homepagehttps://creskolab.uoregon.edu/stacks/
Sectionscience
Priorityoptional
Filenamepool/main/s/stacks/stacks_2.68+dfsg-2_amd64.deb
Size1261080
MD5sum4d8eebc31688e997cf8c015b4ee312aa
SHA25666c76ef1091449dd587db49308579baf75eff3232bd9c27b95c1d4f487d18abd

Files in package

  • /usr/bin/stacks
  • /usr/libexec/debian-med/bin/clone_filter
  • /usr/libexec/debian-med/bin/cstacks
  • /usr/libexec/debian-med/bin/denovo_map
  • /usr/libexec/debian-med/bin/denovo_map.pl
  • /usr/libexec/debian-med/bin/gstacks
  • /usr/libexec/debian-med/bin/kmer_filter
  • /usr/libexec/debian-med/bin/phasedstacks
  • /usr/libexec/debian-med/bin/populations
  • /usr/libexec/debian-med/bin/process_radtags
  • /usr/libexec/debian-med/bin/process_shortreads
  • /usr/libexec/debian-med/bin/ref_map
  • /usr/libexec/debian-med/bin/ref_map.pl
  • /usr/libexec/debian-med/bin/sstacks
  • /usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus
  • /usr/libexec/debian-med/bin/stacks-dist-extract
  • /usr/libexec/debian-med/bin/stacks-gdb
  • /usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage
  • /usr/libexec/debian-med/bin/stacks-integrate-alignments
  • /usr/libexec/debian-med/bin/stacks-private-alleles
  • /usr/libexec/debian-med/bin/stacks-samtools-tview
  • /usr/libexec/debian-med/bin/tsv2bam
  • /usr/libexec/debian-med/bin/ustacks
  • /usr/libexec/stacks/bin/clone_filter
  • /usr/libexec/stacks/bin/cstacks
  • /usr/libexec/stacks/bin/denovo_map
  • /usr/libexec/stacks/bin/denovo_map.pl
  • /usr/libexec/stacks/bin/gstacks
  • /usr/libexec/stacks/bin/kmer_filter
  • /usr/libexec/stacks/bin/phasedstacks
  • /usr/libexec/stacks/bin/populations
  • /usr/libexec/stacks/bin/process_radtags
  • /usr/libexec/stacks/bin/process_shortreads
  • /usr/libexec/stacks/bin/ref_map
  • /usr/libexec/stacks/bin/ref_map.pl
  • /usr/libexec/stacks/bin/sstacks
  • /usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus
  • /usr/libexec/stacks/bin/stacks-dist-extract
  • /usr/libexec/stacks/bin/stacks-gdb
  • /usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage
  • /usr/libexec/stacks/bin/stacks-integrate-alignments
  • /usr/libexec/stacks/bin/stacks-private-alleles
  • /usr/libexec/stacks/bin/stacks-samtools-tview
  • /usr/libexec/stacks/bin/tsv2bam
  • /usr/libexec/stacks/bin/ustacks
  • /usr/share/doc/stacks/README.Debian
  • /usr/share/doc/stacks/changelog.Debian.gz
  • /usr/share/doc/stacks/changelog.gz
  • /usr/share/doc/stacks/copyright