Package - srst2

Package:  srst2
apt-get install srst2
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/s/srst2/srst2_0.2.0-13_amd64.deb (Size: 59.9KiB)

PropertyValue
Packagesrst2
Version0.2.0-13
Installed-Size265
MaintainerDebian Med Packaging Team
Architectureamd64
Dependspython3:any, bowtie2, cd-hit, samtools, python3-scipy, python3-biopython
Recommendspython3-rpy2
DescriptionShort Read Sequence Typing for Bacterial Pathogens
Description-md50b05e0f1dc4b9a9dedc867def03c95b1
Homepagehttps://katholt.github.io/srst2/
Sectionscience
Priorityoptional
Filenamepool/main/s/srst2/srst2_0.2.0-13_amd64.deb
Size61288
MD5sumcecf67e018d45cd5e6ecee791c9aae36
SHA25637141e9f8eb509d0172e3236ad3dfeefee01641fed82a7ba985c99045ce1cca9

Files in package

  • /usr/bin/VFDB_cdhit_to_csv
  • /usr/bin/VFDBgenus
  • /usr/bin/csv_to_gene_db
  • /usr/bin/get_all_vfdb
  • /usr/bin/get_genus_vfdb
  • /usr/bin/getmlst
  • /usr/bin/slurm_srst2
  • /usr/bin/srst2
  • /usr/share/doc-base/srst2.srst2
  • /usr/share/doc/srst2/README.html
  • /usr/share/doc/srst2/changelog.Debian.gz
  • /usr/share/doc/srst2/changelog.gz
  • /usr/share/doc/srst2/copyright
  • /usr/share/doc/srst2/example.txt.gz
  • /usr/share/doc/srst2/tests/test_slurm_srst2.py.gz
  • /usr/share/doc/srst2/tests/test_srst2.py.gz
  • /usr/share/man/man1/VFDB_cdhit_to_csv.1.gz
  • /usr/share/man/man1/VFDBgenus.1.gz
  • /usr/share/man/man1/csv_to_gene_db.1.gz
  • /usr/share/man/man1/get_all_vfdb.1.gz
  • /usr/share/man/man1/get_genus_vfdb.1.gz
  • /usr/share/man/man1/getmlst.1.gz
  • /usr/share/man/man1/slurm_srst2.1.gz
  • /usr/share/man/man1/srst2.1.gz
  • /usr/share/python3/runtime.d/srst2.rtupdate
  • /usr/share/srst2/__init__.py
  • /usr/share/srst2/analyseSRST2.py
  • /usr/share/srst2/consensus_alignment.py
  • /usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py
  • /usr/share/srst2/database_clustering/VFDBgenus.py
  • /usr/share/srst2/database_clustering/align_plot_tree_min3.py
  • /usr/share/srst2/database_clustering/cdhit_to_csv.py
  • /usr/share/srst2/database_clustering/csv_to_gene_db.py
  • /usr/share/srst2/database_clustering/get_all_vfdb.sh
  • /usr/share/srst2/database_clustering/get_genus_vfdb.sh
  • /usr/share/srst2/getmlst.py
  • /usr/share/srst2/qsub_srst2.py
  • /usr/share/srst2/slurm_srst2.py
  • /usr/share/srst2/srst2.py
  • /usr/share/srst2/version.py