Package - sra-toolkit

Package:  sra-toolkit
apt-get install sra-toolkit
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-4_amd64.deb (Size: 6.9MiB)

PropertyValue
Packagesra-toolkit
Sourcesra-sdk
Version3.2.1+dfsg-4
Installed-Size20156
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibabsl20240722 (>= 20240722.0-1), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-310 (>= 1.14.3), libmagic1t64 (>= 5.12), libncbi-vdb3 (>= 3.2.1+dfsg), libncbi-wvdb3 (>= 3.2.1+dfsg), libre2-11-absl20240722, libstdc++6 (>= 14), libxml2 (>= 2.7.4), zlib1g (>= 1:1.2.2)
Recommendsmed-config
Descriptionutilities for the NCBI Sequence Read Archive
Description-md51a61cd8ef6f417d5f86c6c13697e7a05
Homepagehttps://github.com/ncbi/sra-tools/
Sectionscience
Priorityoptional
Filenamepool/main/s/sra-sdk/sra-toolkit_3.2.1+dfsg-4_amd64.deb
Size7232232
MD5sumdd8192c820951ba49b636b2d419e36d3
SHA256c2a8f7933b0f86665f0669fb4559b818ccda40c9b2967e25f7297d137199ad50

Files in package

  • /etc/ncbi/certs.kfg
  • /etc/ncbi/default.kfg
  • /etc/ncbi/vdb-copy.kfg
  • /usr/bin/abi-dump
  • /usr/bin/abi-load
  • /usr/bin/align-cache
  • /usr/bin/align-info
  • /usr/bin/bam-load
  • /usr/bin/cache-mgr
  • /usr/bin/ccextract
  • /usr/bin/cg-load
  • /usr/bin/check-corrupt
  • /usr/bin/check-redact
  • /usr/bin/compute-coverage
  • /usr/bin/compute-coverage-ngs
  • /usr/bin/copycat
  • /usr/bin/crc32sum
  • /usr/bin/dump-blob-boundaries
  • /usr/bin/dump-ref-fasta
  • /usr/bin/fastconv
  • /usr/bin/fasterq-dump
  • /usr/bin/fastq-dump
  • /usr/bin/fastq-load
  • /usr/bin/general-loader
  • /usr/bin/helicos-load
  • /usr/bin/illumina-dump
  • /usr/bin/illumina-load
  • /usr/bin/kar
  • /usr/bin/kar+
  • /usr/bin/kar+meta
  • /usr/bin/kdb-index
  • /usr/bin/kdbmeta
  • /usr/bin/latf-load
  • /usr/bin/make-read-filter
  • /usr/bin/md5cp
  • /usr/bin/meta-cmp
  • /usr/bin/meta-copy
  • /usr/bin/meta-repair
  • /usr/bin/ngs-pileup
  • /usr/bin/pacbio-correct
  • /usr/bin/pacbio-load
  • /usr/bin/pacbio-loadxml
  • /usr/bin/pileup-stats
  • /usr/bin/prefetch
  • /usr/bin/rcexplain
  • /usr/bin/read-filter-redact
  • /usr/bin/ref-variation
  • /usr/bin/rowwritetest
  • /usr/bin/sam-dump
  • /usr/bin/samview
  • /usr/bin/samview-util
  • /usr/bin/schema-replace
  • /usr/bin/sff-dump
  • /usr/bin/sff-load
  • /usr/bin/sharq
  • /usr/bin/sortreadtest
  • /usr/bin/sra-info
  • /usr/bin/sra-pileup
  • /usr/bin/sra-search
  • /usr/bin/sra-sort
  • /usr/bin/sra-sort-cg
  • /usr/bin/sra-stat
  • /usr/bin/srapath
  • /usr/bin/srf-load
  • /usr/bin/test-download
  • /usr/bin/test-read-write-cursor
  • /usr/bin/test-sra
  • /usr/bin/testld
  • /usr/bin/txt2kdb
  • /usr/bin/var-expand
  • /usr/bin/vdb-config
  • /usr/bin/vdb-copy
  • /usr/bin/vdb-decrypt
  • /usr/bin/vdb-diff
  • /usr/bin/vdb-dump
  • /usr/bin/vdb-encrypt
  • /usr/bin/vdb-lock
  • /usr/bin/vdb-sql
  • /usr/bin/vdb-unlock
  • /usr/bin/vdb-validate
  • /usr/lib/sra-toolkit/fasterq-dump-orig
  • /usr/lib/sra-toolkit/fastq-dump-orig
  • /usr/lib/sra-toolkit/prefetch-orig
  • /usr/lib/sra-toolkit/sam-dump-orig
  • /usr/lib/sra-toolkit/sra-pileup-orig
  • /usr/lib/sra-toolkit/srapath-orig
  • /usr/lib/sra-toolkit/sratools
  • /usr/lib/sra-toolkit/vdb-dump-orig
  • /usr/share/doc/sra-toolkit/README-blastn
  • /usr/share/doc/sra-toolkit/README-vdb-config.gz
  • /usr/share/doc/sra-toolkit/README.Debian
  • /usr/share/doc/sra-toolkit/README.md.gz
  • /usr/share/doc/sra-toolkit/README.test
  • /usr/share/doc/sra-toolkit/changelog.Debian.gz
  • /usr/share/doc/sra-toolkit/changelog.gz
  • /usr/share/doc/sra-toolkit/copyright
  • /usr/share/doc/sra-toolkit/run-unit-test
  • /usr/share/doc/sra-toolkit/test-data.tar.gz