Package - shasta
Primary informations
Download package: http://deb.debian.org/debian/pool/main/s/shasta/shasta_0.12.0-1+b2_amd64.deb (Size: 610.7KiB)| Property | Value |
|---|---|
| Package | shasta |
| Source | shasta (0.12.0-1) |
| Version | 0.12.0-1+b2 |
| Installed-Size | 2599 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Depends | libboost-chrono1.83.0t64 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), python3-shasta (= 0.12.0-1+b2) |
| Description | nanopore whole genome assembly (binaries and scripts) |
| Description-md5 | 7bb8ac3039d8e82623b175abb8ab2e67 |
| Homepage | https://github.com/chanzuckerberg/shasta |
| Section | science |
| Priority | optional |
| Filename | pool/main/s/shasta/shasta_0.12.0-1+b2_amd64.deb |
| Size | 625376 |
| MD5sum | 975300cffd2ee20c3926a83daebf1ef8 |
| SHA256 | 62cd7c134c785739c3327404b9a71edad73da7616538967109c8e7d533f1510d |
Files in package
- /usr/bin/shasta
- /usr/share/doc/shasta/AlignOrientedReads.py
- /usr/share/doc/shasta/AlignOrientedReads1.py
- /usr/share/doc/shasta/AlignOrientedReads4.py
- /usr/share/doc/shasta/AnalyzeAlignmentMatrix.py
- /usr/share/doc/shasta/AnalyzeAssemblyGraphBubbles.py
- /usr/share/doc/shasta/AnalyzeReadGraph.py
- /usr/share/doc/shasta/Assemble.py
- /usr/share/doc/shasta/AssembleMarkerGraphEdges.py
- /usr/share/doc/shasta/AssembleMarkerGraphVertices.py
- /usr/share/doc/shasta/AssembleSegment.py
- /usr/share/doc/shasta/CheckConfigurations.py
- /usr/share/doc/shasta/CheckMarkerGraphIsStrandSymmetric.py
- /usr/share/doc/shasta/CleanupDuplicateMarkers.py
- /usr/share/doc/shasta/CleanupRunDirectory.py
- /usr/share/doc/shasta/ClusterMarkerGraphEdgeOrientedReads.py
- /usr/share/doc/shasta/ColorGfaBySimilarityToSegment.py
- /usr/share/doc/shasta/ColorGfaKeySegments.py
- /usr/share/doc/shasta/ColorGfaWithTwoReads.py
- /usr/share/doc/shasta/ComputeAlignments.py
- /usr/share/doc/shasta/ComputeAssemblyStatistics.py
- /usr/share/doc/shasta/ComputeMarkerGraphCoverageHistogram.py
- /usr/share/doc/shasta/ComputeMarkerGraphVerticesCoverageData.py
- /usr/share/doc/shasta/ComputeReadGraphConnectedComponents.py
- /usr/share/doc/shasta/ComputeSortedMarkers.py
- /usr/share/doc/shasta/Copy.py
- /usr/share/doc/shasta/CopyDirectory.py
- /usr/share/doc/shasta/CreateAndCleanupMarkerGraph.py
- /usr/share/doc/shasta/CreateAssembly.py
- /usr/share/doc/shasta/CreateAssemblyGraphEdges.py
- /usr/share/doc/shasta/CreateAssemblyGraphVertices.py
- /usr/share/doc/shasta/CreateCompressedAssemblyGraph.py
- /usr/share/doc/shasta/CreateConfigurationTable.py
- /usr/share/doc/shasta/CreateLocalSubgraph.py
- /usr/share/doc/shasta/CreateMarkerGraphAndTransitiveReduction.py
- /usr/share/doc/shasta/CreateMarkerGraphEdges.py
- /usr/share/doc/shasta/CreateMarkerGraphEdgesStrict.py
- /usr/share/doc/shasta/CreateMarkerGraphSecondaryEdges.py
- /usr/share/doc/shasta/CreateMarkerGraphVertices.py
- /usr/share/doc/shasta/CreateModules.py
- /usr/share/doc/shasta/CreateReadGraph.py
- /usr/share/doc/shasta/CreateReadGraph2.py
- /usr/share/doc/shasta/CreateReadGraphMode1.py
- /usr/share/doc/shasta/CreateReadGraphUsingPseudoPaths.py
- /usr/share/doc/shasta/Detangle.py
- /usr/share/doc/shasta/Detangle2.py
- /usr/share/doc/shasta/FastqGzToFasta.py
- /usr/share/doc/shasta/FastqToFasta.py
- /usr/share/doc/shasta/FastqToFastaAll.py
- /usr/share/doc/shasta/FindAlignmentCandidatesLowHash0.py
- /usr/share/doc/shasta/FindAssemblyGraphBubbles.py
- /usr/share/doc/shasta/FindMarkerGraphReverseComplementEdges.py
- /usr/share/doc/shasta/FindMarkerGraphReverseComplementVertices.py
- /usr/share/doc/shasta/FindMarkers.py
- /usr/share/doc/shasta/FlagChimericReads.py
- /usr/share/doc/shasta/FlagCrossStrandReadGraphEdges.py
- /usr/share/doc/shasta/FlagInconsistentAlignments.py
- /usr/share/doc/shasta/FlagPalindromicReads.py
- /usr/share/doc/shasta/FlagPrimaryMarkerGraphEdges.py
- /usr/share/doc/shasta/GenerateConfig.py.gz
- /usr/share/doc/shasta/GenerateFeedback.py.gz
- /usr/share/doc/shasta/GenerateRandomHaplotypes.py
- /usr/share/doc/shasta/GetConfig.py
- /usr/share/doc/shasta/GetReadId.py
- /usr/share/doc/shasta/HistogramReadLength.py
- /usr/share/doc/shasta/InstallPrerequisites-Ubuntu.sh
- /usr/share/doc/shasta/Mode2Assembly-A.py.gz
- /usr/share/doc/shasta/Mode2Assembly-B-Prepare.py
- /usr/share/doc/shasta/Mode2Assembly-B.py
- /usr/share/doc/shasta/Mode3AssembleComponent.py
- /usr/share/doc/shasta/Mode3Assembly.py
- /usr/share/doc/shasta/PruneMarkerGraphStrongSubgraph.py
- /usr/share/doc/shasta/ReadGraphClustering.py
- /usr/share/doc/shasta/RemoveReadGraphBridges.py
- /usr/share/doc/shasta/RestoreRun.py
- /usr/share/doc/shasta/RunAssemblies.py
- /usr/share/doc/shasta/SaveRun.py
- /usr/share/doc/shasta/SetMarkerGraphEdgeFlags.py
- /usr/share/doc/shasta/SetupRunDirectory.py
- /usr/share/doc/shasta/SetupSmallRunDirectory.py
- /usr/share/doc/shasta/SimpleBayesianConsensusCallerCreateBuiltin.py
- /usr/share/doc/shasta/SimplifyMarkerGraph.py
- /usr/share/doc/shasta/SplitMarkerGraphSecondaryEdges.py
- /usr/share/doc/shasta/StepSequence1.py
- /usr/share/doc/shasta/SummarizeAssemblies.py
- /usr/share/doc/shasta/Test.py
- /usr/share/doc/shasta/TestSimpleBayesianConsensusCaller.py
- /usr/share/doc/shasta/TransitiveReduction.py
- /usr/share/doc/shasta/TravisCheckBuildMacOS.sh
- /usr/share/doc/shasta/TravisCheckBuildUbuntu.sh
- /usr/share/doc/shasta/WriteAlignmentCandidates.py
- /usr/share/doc/shasta/WriteAssemblyGraph.py
- /usr/share/doc/shasta/WriteBadMarkerGraphVertices.py
- /usr/share/doc/shasta/WriteFasta.py
- /usr/share/doc/shasta/WriteGfa.py
- /usr/share/doc/shasta/WriteGfaBothStrands.py
- /usr/share/doc/shasta/WriteLocalAlignmentCandidateReads.py
- /usr/share/doc/shasta/WriteLocalReadGraphReads.py
- /usr/share/doc/shasta/WriteMarkers.py
- /usr/share/doc/shasta/WriteOrientedRead.py
- /usr/share/doc/shasta/WriteOrientedReadPath.py
- /usr/share/doc/shasta/WriteOrientedReadsBySegment.py
- /usr/share/doc/shasta/WriteParallelMarkerGraphEdges.py
- /usr/share/doc/shasta/WritePseudoPath.py
- /usr/share/doc/shasta/WriteRead.py
- /usr/share/doc/shasta/WriteReadGraphEdges.py
- /usr/share/doc/shasta/WriteReads.py
- /usr/share/doc/shasta/changelog.Debian.amd64.gz
- /usr/share/doc/shasta/changelog.Debian.gz
- /usr/share/doc/shasta/comparePhaseAssignments.py.gz
- /usr/share/doc/shasta/copyright
- /usr/share/doc/shasta/dset64Test.py
- /usr/share/doc/shasta/examples/TinyTest.fasta.gz
- /usr/share/doc/shasta/examples/conf/HiFi-Oct2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Dec2019.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Human-SingleFlowcell-Phased-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Jun2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Oct2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-OldGuppy-Sep2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Phased-Aug2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Phased-Jan2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Phased-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Fast-Nov2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Phased-R10-Slow-Nov2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Plants-Apr2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-R10-Fast-Nov2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-R10-Slow-Nov2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-Sep2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Dec2019.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Jan2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Jun2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Oct2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Jan2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-May2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Nov2022.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Phased-Oct2021.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-Sep2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-UL-iterative-Sep2020.conf
- /usr/share/doc/shasta/examples/conf/Nanopore-ncm23-May2024.conf
- /usr/share/doc/shasta/examples/conf/PacBio-CCS-Dec2019.conf
- /usr/share/doc/shasta/examples/conf/PacBio-CLR-Dec2019.conf
- /usr/share/doc/shasta/examples/conf/README.md
- /usr/share/doc/shasta/examples/conf/RemoveConflicts.conf
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-10.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-11.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-2.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-3.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-5.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-6.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-7.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-8.csv
- /usr/share/doc/shasta/examples/conf/SimpleBayesianConsensusCaller-9.csv
- /usr/share/doc/shasta/generateBandageLabelsFromAlignment.py
- /usr/share/doc/shasta/testGlobalMsa.py
- /usr/share/lintian/overrides/shasta
- /usr/share/man/man1/shasta.1.gz