Package - seqsero

Package:  seqsero
apt-get install seqsero
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/s/seqsero/seqsero_1.0.1+dfsg-6_amd64.deb (Size: 349.7KiB)

PropertyValue
Packageseqsero
Version1.0.1+dfsg-6
Installed-Size3491
MaintainerDebian Med Packaging Team
Architectureamd64
Dependspython3:any, python3-biopython, bwa, samtools, sra-toolkit
Suggestsispcr
DescriptionSalmonella serotyping from genome sequencing data
Description-md58a40b6660777f02ab6eed37f09c29dc5
Homepagehttps://github.com/denglab/SeqSero
Sectionscience
Priorityoptional
Filenamepool/main/s/seqsero/seqsero_1.0.1+dfsg-6_amd64.deb
Size358116
MD5sum744848c9c6bb706b8e3cb96375e6edb2
SHA256042f2f1e7f49abb9360a13f2443acfd2318dd331cb2a7cb494fa7dcb26713ad6

Files in package

  • /usr/bin/seqsero
  • /usr/bin/seqsero_batch_pair-end
  • /usr/share/doc-base/seqsero.seqsero
  • /usr/share/doc/seqsero/README.Debian
  • /usr/share/doc/seqsero/README.md
  • /usr/share/doc/seqsero/README.test
  • /usr/share/doc/seqsero/User_manual.pdf
  • /usr/share/doc/seqsero/changelog.Debian.gz
  • /usr/share/doc/seqsero/copyright
  • /usr/share/doc/seqsero/examples/single_read.fasta
  • /usr/share/doc/seqsero/examples/sra_data.fastq
  • /usr/share/doc/seqsero/run-unit-test
  • /usr/share/man/man1/seqsero.1.gz
  • /usr/share/man/man1/seqsero_batch_pair-end.1.gz
  • /usr/share/python3/runtime.d/seqsero.rtupdate
  • /usr/share/seqsero/SeqSero.py
  • /usr/share/seqsero/database/FliC_Family_b,d,j_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_fg_special.fasta
  • /usr/share/seqsero/database/FliC_Family_g_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_k,z_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_k_z58_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_l,v_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_r,i_special_genes_short.fasta
  • /usr/share/seqsero/database/FliC_Family_z36z38_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_z44_k_special_genes.fasta
  • /usr/share/seqsero/database/FliC_Family_z4z23_special_genes.fasta
  • /usr/share/seqsero/database/FliC_f_g_s_whole.fasta
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.amb
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.ann
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.bwt
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.pac
  • /usr/share/seqsero/database/FljB_1_2_7_whole.fasta.sa
  • /usr/share/seqsero/database/FljB_Family_1_special_genes_all.fasta
  • /usr/share/seqsero/database/FljB_Family_e_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_k,z_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_l,v_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_l,w_special_genes.fasta
  • /usr/share/seqsero/database/FljB_Family_z_special_genes.fasta
  • /usr/share/seqsero/database/FljB_l,z13,z28_whole.fasta
  • /usr/share/seqsero/database/FljB_z6_whole.fasta
  • /usr/share/seqsero/database/H_combine_update_9_03_2014_new.fasta
  • /usr/share/seqsero/database/H_new_fliC_protein_database.fasta
  • /usr/share/seqsero/database/H_new_fljB_protein_database.fasta
  • /usr/share/seqsero/database/H_newest_database.fasta
  • /usr/share/seqsero/database/O_3,10_and_1,3,19_spe.fasta
  • /usr/share/seqsero/database/O_4_wzy_but_not_in_rfb.fasta
  • /usr/share/seqsero/database/ParaA_rfb.fasta
  • /usr/share/seqsero/database/ParaA_rfb.fasta.amb
  • /usr/share/seqsero/database/ParaA_rfb.fasta.ann
  • /usr/share/seqsero/database/ParaA_rfb.fasta.bwt
  • /usr/share/seqsero/database/ParaA_rfb.fasta.pac
  • /usr/share/seqsero/database/ParaA_rfb.fasta.sa
  • /usr/share/seqsero/database/Typhimurium_LT2_gnd_galF.fasta
  • /usr/share/seqsero/database/complete_oafA.fasta
  • /usr/share/seqsero/database/fliC_b_whole.fasta
  • /usr/share/seqsero/database/fliC_k,z_whole.fasta
  • /usr/share/seqsero/database/fliC_l_z13_whole.fasta
  • /usr/share/seqsero/database/fliC_r_whole.fasta
  • /usr/share/seqsero/database/fliC_r_whole.fasta.amb
  • /usr/share/seqsero/database/fliC_r_whole.fasta.ann
  • /usr/share/seqsero/database/fliC_r_whole.fasta.bwt
  • /usr/share/seqsero/database/fliC_r_whole.fasta.pac
  • /usr/share/seqsero/database/fliC_r_whole.fasta.sa
  • /usr/share/seqsero/database/fliC_z36,z38_whole.fasta
  • /usr/share/seqsero/database/fliC_z4,z23_family.fasta
  • /usr/share/seqsero/database/fliC_z4z23_whole.fasta
  • /usr/share/seqsero/database/fliC_z58_k_special_sequences.fasta
  • /usr/share/seqsero/database/fljB_e,n,z15_whole.fasta
  • /usr/share/seqsero/database/new_Oserotype.fasta
  • /usr/share/seqsero/database/oafA_of_O4_O5.fasta
  • /usr/share/seqsero/database/special_O_genes.fasta
  • /usr/share/seqsero/database/special_new_O_genes.fasta
  • /usr/share/seqsero/database/specific_genes.fasta
  • /usr/share/seqsero/database/tyr_of_O2_O9.fasta
  • /usr/share/seqsero/libs/BWA_analysis_H_update_new_family_dependent.py
  • /usr/share/seqsero/libs/BWA_analysis_O_new_dependent.py
  • /usr/share/seqsero/libs/H_combination_output_analysis.py
  • /usr/share/seqsero/libs/Initial_Conditions.py
  • /usr/share/seqsero/libs/Initial_functions.py
  • /usr/share/seqsero/libs/Otype_determine_analysis.py
  • /usr/share/seqsero/libs/compare_and_change_two_fastq_id.py
  • /usr/share/seqsero/libs/deletion_compare.py
  • /usr/share/seqsero/libs/run_auto_All_for_assemblies.py
  • /usr/share/seqsero/libs/run_auto_All_for_web_multi_revise.py
  • /usr/share/seqsero/libs/special_gene_test_assemblies.py
  • /usr/share/seqsero/libs/splitPairedEndReads.pl
  • /usr/share/seqsero/libs/split_interleaved_fastq.pl
  • /usr/share/seqsero/primers/seq_primer_fliC.txt
  • /usr/share/seqsero/primers/seq_primer_fljB.txt