Package - rsem

Package:  rsem
apt-get install rsem
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/rsem/rsem_1.3.3+dfsg-3+b1_amd64.deb (Size: 34.5MiB)

PropertyValue
Packagersem
Sourcersem (1.3.3+dfsg-3)
Version1.3.3+dfsg-3+b1
Installed-Size37100
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.34), libgcc-s1 (>= 3.0), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), perl:any, r-base-core, bowtie | bowtie2, python3
Suggestsr-bioc-ebseq, hisat2
DescriptionRNA-Seq by Expectation-Maximization
Description-md520ba6f1e1adc3851b48029310a06b4ed
Homepagehttps://deweylab.github.io/RSEM/
Sectionscience
Priorityoptional
Filenamepool/main/r/rsem/rsem_1.3.3+dfsg-3+b1_amd64.deb
Size36142624
MD5sum78c0fdaee9e3f552ecb482ae0ea2e20a
SHA25626e8432f8cc3982e7318e67069b578d88c25e9d27984c06c793f9b142fb52584

Files in package

  • /usr/bin/convert-sam-for-rsem
  • /usr/bin/extract-transcript-to-gene-map-from-trinity
  • /usr/bin/rsem-bam2readdepth
  • /usr/bin/rsem-bam2wig
  • /usr/bin/rsem-build-read-index
  • /usr/bin/rsem-calculate-credibility-intervals
  • /usr/bin/rsem-calculate-expression
  • /usr/bin/rsem-control-fdr
  • /usr/bin/rsem-extract-reference-transcripts
  • /usr/bin/rsem-gen-transcript-plots
  • /usr/bin/rsem-generate-data-matrix
  • /usr/bin/rsem-generate-ngvector
  • /usr/bin/rsem-get-unique
  • /usr/bin/rsem-gff3-to-gtf
  • /usr/bin/rsem-parse-alignments
  • /usr/bin/rsem-plot-model
  • /usr/bin/rsem-plot-transcript-wiggles
  • /usr/bin/rsem-prepare-reference
  • /usr/bin/rsem-preref
  • /usr/bin/rsem-refseq-extract-primary-assembly
  • /usr/bin/rsem-run-em
  • /usr/bin/rsem-run-gibbs
  • /usr/bin/rsem-sam-validator
  • /usr/bin/rsem-scan-for-paired-end-reads
  • /usr/bin/rsem-simulate-reads
  • /usr/bin/rsem-synthesis-reference-transcripts
  • /usr/bin/rsem-tbam2gbam
  • /usr/bin/rsem_perl_utils.pm
  • /usr/share/doc/rsem/README.md.gz
  • /usr/share/doc/rsem/README.test
  • /usr/share/doc/rsem/WHAT_IS_NEW.gz
  • /usr/share/doc/rsem/changelog.Debian.amd64.gz
  • /usr/share/doc/rsem/changelog.Debian.gz
  • /usr/share/doc/rsem/cnt_file_description.txt
  • /usr/share/doc/rsem/copyright
  • /usr/share/doc/rsem/examples/mouse_ref_building_from_transcripts.tar.gz
  • /usr/share/doc/rsem/model_file_description.txt.gz
  • /usr/share/doc/rsem/run-unit-test
  • /usr/share/man/man1/convert-sam-for-rsem.1.gz
  • /usr/share/man/man1/rsem-bam2wig.1.gz
  • /usr/share/man/man1/rsem-calculate-expression.1.gz
  • /usr/share/man/man1/rsem-control-fdr.1.gz
  • /usr/share/man/man1/rsem-generate-ngvector.1.gz
  • /usr/share/man/man1/rsem-gff3-to-gtf.1.gz
  • /usr/share/man/man1/rsem-plot-transcript-wiggles.1.gz
  • /usr/share/man/man1/rsem-prepare-reference.1.gz
  • /usr/share/man/man1/rsem-run-ebseq.1.gz
  • /usr/share/man/man1/rsem-simulate-reads.1.gz
  • /usr/share/perl5/rsem_perl_utils.pm