Package - ragout

Package:  ragout
apt-get install ragout
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/ragout/ragout_2.3-5_amd64.deb (Size: 2.0MiB)

PropertyValue
Packageragout
Version2.3-5
Installed-Size9659
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), python3:any, python3-networkx, python3-six
Recommendssibelia
DescriptionReference-Assisted Genome Ordering UTility
Description-md58f0c7441aed2bf02da71eefce4a282fe
Homepagehttps://github.com/fenderglass/Ragout/
Sectionscience
Priorityoptional
Filenamepool/main/r/ragout/ragout_2.3-5_amd64.deb
Size2122640
MD5sum51eabc48199ffccd68da416b55ac2a58
SHA256617e5a16b2fefc5cc4cc319a056e0ba57ea893aafa5e272e0f8d57e520e294ec

Files in package

  • /usr/bin/ragout
  • /usr/bin/ragout-maf2synteny
  • /usr/bin/ragout-overlap
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/ragout-2.3.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/ragout/__init__.py
  • /usr/lib/python3/dist-packages/ragout/__version__.py
  • /usr/lib/python3/dist-packages/ragout/assembly_graph/__init__.py
  • /usr/lib/python3/dist-packages/ragout/assembly_graph/assembly_refine.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/__init__.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/breakpoint_graph.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/chimera_detector.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/inferer.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/permutation.py
  • /usr/lib/python3/dist-packages/ragout/breakpoint_graph/repeat_resolver.py
  • /usr/lib/python3/dist-packages/ragout/maf2synteny/__init__.py
  • /usr/lib/python3/dist-packages/ragout/maf2synteny/maf2synteny.py
  • /usr/lib/python3/dist-packages/ragout/main.py
  • /usr/lib/python3/dist-packages/ragout/newick/__init__.py
  • /usr/lib/python3/dist-packages/ragout/newick/lexer.py
  • /usr/lib/python3/dist-packages/ragout/newick/parser.py
  • /usr/lib/python3/dist-packages/ragout/newick/tokens.py
  • /usr/lib/python3/dist-packages/ragout/newick/tree.py
  • /usr/lib/python3/dist-packages/ragout/overlap/__init__.py
  • /usr/lib/python3/dist-packages/ragout/overlap/overlap.py
  • /usr/lib/python3/dist-packages/ragout/parsers/__init__.py
  • /usr/lib/python3/dist-packages/ragout/parsers/fasta_parser.py
  • /usr/lib/python3/dist-packages/ragout/parsers/phylogeny_parser.py
  • /usr/lib/python3/dist-packages/ragout/parsers/recipe_parser.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/__init__.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/inferer.py
  • /usr/lib/python3/dist-packages/ragout/phylogeny/phylogeny.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/__init__.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/merge_iters.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/output_generator.py
  • /usr/lib/python3/dist-packages/ragout/scaffolder/scaffolder.py
  • /usr/lib/python3/dist-packages/ragout/shared/__init__.py
  • /usr/lib/python3/dist-packages/ragout/shared/config.py
  • /usr/lib/python3/dist-packages/ragout/shared/datatypes.py
  • /usr/lib/python3/dist-packages/ragout/shared/debug.py
  • /usr/lib/python3/dist-packages/ragout/shared/utils.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/__init__.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/cactus.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/hal.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/maf.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/sibelia.py
  • /usr/lib/python3/dist-packages/ragout/synteny_backend/synteny_backend.py
  • /usr/lib/python3/dist-packages/ragout/tests/__init__.py
  • /usr/lib/python3/dist-packages/ragout/tests/data/DH1.fasta
  • /usr/lib/python3/dist-packages/ragout/tests/data/ecoli.rcp
  • /usr/lib/python3/dist-packages/ragout/tests/data/mg1655.coords
  • /usr/lib/python3/dist-packages/ragout/tests/data/mg1655_contigs.fasta
  • /usr/lib/python3/dist-packages/ragout/tests/test_toy.py
  • /usr/share/doc/ragout/changelog.Debian.gz
  • /usr/share/doc/ragout/copyright
  • /usr/share/man/man1/ragout-maf2synteny.1.gz
  • /usr/share/man/man1/ragout-overlap.1.gz
  • /usr/share/man/man1/ragout.1.gz