Package - r-cran-phangorn

Package: r-cran-phangorn
apt-get install r-cran-phangorn

Documentations in package:

r-cran-phangorn

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/r-cran-phangorn/r-cran-phangorn_2.12.1+dfsg-1_amd64.deb (Size: 1.7MiB)

Property	Value
Package	r-cran-phangorn
Version	2.12.1+dfsg-1
Installed-Size	3076
Maintainer	Debian R Packages Maintainers
Architecture	amd64
Depends	r-api-4.0, r-cran-ape (>= 5.8), r-cran-digest, r-cran-fastmatch, r-cran-generics, r-cran-igraph (>= 1.0), r-cran-matrix, r-cran-quadprog, r-cran-rcpp, libblas3 \| libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 14)
Recommends	r-bioc-biostrings, r-cran-ggseqlogo, r-cran-ggplot2, r-cran-knitr, r-cran-magick, r-cran-rgl, r-cran-rmarkdown, r-cran-seqinr, r-cran-testthat (>= 3.0.0), r-cran-tinytest, r-cran-vdiffr, r-cran-xtable
Description	GNU R package for phylogenetic analysis
Description-md5	30da123f29512ae1bddc3b06ad7dd4fa
Homepage	https://cran.r-project.org/package=phangorn
Section	gnu-r
Priority	optional
Filename	pool/main/r/r-cran-phangorn/r-cran-phangorn_2.12.1+dfsg-1_amd64.deb
Size	1819368
MD5sum	3d2733e67268bf3c8f88a00802b1d665
SHA256	cf325a180367c9859f1190debc34eca882a717f44e954ddce28e904d4e75e1c6

Files in package

/usr/lib/R/site-library/phangorn/CITATION
/usr/lib/R/site-library/phangorn/DESCRIPTION
/usr/lib/R/site-library/phangorn/INDEX
/usr/lib/R/site-library/phangorn/Meta/Rd.rds
/usr/lib/R/site-library/phangorn/Meta/data.rds
/usr/lib/R/site-library/phangorn/Meta/features.rds
/usr/lib/R/site-library/phangorn/Meta/hsearch.rds
/usr/lib/R/site-library/phangorn/Meta/links.rds
/usr/lib/R/site-library/phangorn/Meta/nsInfo.rds
/usr/lib/R/site-library/phangorn/Meta/package.rds
/usr/lib/R/site-library/phangorn/Meta/vignette.rds
/usr/lib/R/site-library/phangorn/NAMESPACE
/usr/lib/R/site-library/phangorn/NEWS
/usr/lib/R/site-library/phangorn/R/phangorn
/usr/lib/R/site-library/phangorn/R/phangorn.rdb
/usr/lib/R/site-library/phangorn/R/phangorn.rdx
/usr/lib/R/site-library/phangorn/R/sysdata.rdb
/usr/lib/R/site-library/phangorn/R/sysdata.rdx
/usr/lib/R/site-library/phangorn/README
/usr/lib/R/site-library/phangorn/data/Laurasiatherian.RData
/usr/lib/R/site-library/phangorn/data/chloroplast.RData
/usr/lib/R/site-library/phangorn/data/mites.RData
/usr/lib/R/site-library/phangorn/data/yeast.RData
/usr/lib/R/site-library/phangorn/doc/AdvancedFeatures.R
/usr/lib/R/site-library/phangorn/doc/AdvancedFeatures.Rmd
/usr/lib/R/site-library/phangorn/doc/Ancestral.R
/usr/lib/R/site-library/phangorn/doc/Ancestral.Rmd
/usr/lib/R/site-library/phangorn/doc/IntertwiningTreesAndNetworks.R
/usr/lib/R/site-library/phangorn/doc/IntertwiningTreesAndNetworks.Rmd
/usr/lib/R/site-library/phangorn/doc/MLbyHand.R
/usr/lib/R/site-library/phangorn/doc/MLbyHand.Rmd
/usr/lib/R/site-library/phangorn/doc/Morphological.R
/usr/lib/R/site-library/phangorn/doc/Morphological.Rmd
/usr/lib/R/site-library/phangorn/doc/Networx.R
/usr/lib/R/site-library/phangorn/doc/Networx.Rmd
/usr/lib/R/site-library/phangorn/doc/Trees.R
/usr/lib/R/site-library/phangorn/doc/Trees.Rmd
/usr/lib/R/site-library/phangorn/doc/index.html
/usr/lib/R/site-library/phangorn/extdata/Blosum62.dat
/usr/lib/R/site-library/phangorn/extdata/Dayhoff.dat
/usr/lib/R/site-library/phangorn/extdata/FLU.dat
/usr/lib/R/site-library/phangorn/extdata/HIVb.dat
/usr/lib/R/site-library/phangorn/extdata/HIVw.dat
/usr/lib/R/site-library/phangorn/extdata/JTT.dat
/usr/lib/R/site-library/phangorn/extdata/MtZoa.dat
/usr/lib/R/site-library/phangorn/extdata/RtREV.dat
/usr/lib/R/site-library/phangorn/extdata/VT.dat
/usr/lib/R/site-library/phangorn/extdata/cpREV.dat
/usr/lib/R/site-library/phangorn/extdata/dayhoff-dcmut.dat
/usr/lib/R/site-library/phangorn/extdata/jtt-dcmut.dat
/usr/lib/R/site-library/phangorn/extdata/lg.dat
/usr/lib/R/site-library/phangorn/extdata/mites.csv
/usr/lib/R/site-library/phangorn/extdata/mites.nex
/usr/lib/R/site-library/phangorn/extdata/mtArt.dat
/usr/lib/R/site-library/phangorn/extdata/mtREV24.dat
/usr/lib/R/site-library/phangorn/extdata/mtmam.dat
/usr/lib/R/site-library/phangorn/extdata/trees/H3N2_NA_20.csv
/usr/lib/R/site-library/phangorn/extdata/trees/H3N2_NA_20.fasta
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.Wang.out
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bestTree.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitions.woodmouse
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bipartitionsBranchLabels.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.3moles
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.AIs
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.Wang.out
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.YCh
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.mtG
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_bootstrap.woodmouse
/usr/lib/R/site-library/phangorn/extdata/trees/RAxML_distances.Wang.nxs
/usr/lib/R/site-library/phangorn/extdata/trees/Splits.txt
/usr/lib/R/site-library/phangorn/extdata/trees/primates.dna
/usr/lib/R/site-library/phangorn/extdata/trees/seqfile.txt
/usr/lib/R/site-library/phangorn/extdata/trees/tree.txt
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.fasta
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.con
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.run1.t
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.mrbayes.nex.run2.t
/usr/lib/R/site-library/phangorn/extdata/trees/woodmouse.nxs
/usr/lib/R/site-library/phangorn/extdata/wag.dat
/usr/lib/R/site-library/phangorn/help/AnIndex
/usr/lib/R/site-library/phangorn/help/aliases.rds
/usr/lib/R/site-library/phangorn/help/figures/logo.png
/usr/lib/R/site-library/phangorn/help/figures/phangorn_sticker.png
/usr/lib/R/site-library/phangorn/help/paths.rds
/usr/lib/R/site-library/phangorn/help/phangorn.rdb
/usr/lib/R/site-library/phangorn/help/phangorn.rdx
/usr/lib/R/site-library/phangorn/html/00Index.html
/usr/lib/R/site-library/phangorn/html/R.css
/usr/lib/R/site-library/phangorn/libs/phangorn.so
/usr/lib/R/site-library/phangorn/tinytest/test_Clanistics.R
/usr/lib/R/site-library/phangorn/tinytest/test_SH.R
/usr/lib/R/site-library/phangorn/tinytest/test_add_edge_length.R
/usr/lib/R/site-library/phangorn/tinytest/test_ancestral.R
/usr/lib/R/site-library/phangorn/tinytest/test_bootstrap.R
/usr/lib/R/site-library/phangorn/tinytest/test_candidate_tree.R
/usr/lib/R/site-library/phangorn/tinytest/test_codon.R
/usr/lib/R/site-library/phangorn/tinytest/test_dist_tree.R
/usr/lib/R/site-library/phangorn/tinytest/test_distances.R
/usr/lib/R/site-library/phangorn/tinytest/test_hadamard.R
/usr/lib/R/site-library/phangorn/tinytest/test_hash.R
/usr/lib/R/site-library/phangorn/tinytest/test_mast.R
/usr/lib/R/site-library/phangorn/tinytest/test_modelTest.R
/usr/lib/R/site-library/phangorn/tinytest/test_parsimony.R
/usr/lib/R/site-library/phangorn/tinytest/test_phyDat.R
/usr/lib/R/site-library/phangorn/tinytest/test_pml.R
/usr/lib/R/site-library/phangorn/tinytest/test_pmlCluster.R
/usr/lib/R/site-library/phangorn/tinytest/test_pmlMix.R
/usr/lib/R/site-library/phangorn/tinytest/test_pmlPart.R
/usr/lib/R/site-library/phangorn/tinytest/test_pmlPen.R
/usr/lib/R/site-library/phangorn/tinytest/test_pml_generics.R
/usr/lib/R/site-library/phangorn/tinytest/test_readnexus_multi.R
/usr/lib/R/site-library/phangorn/tinytest/test_speciesTree.R
/usr/lib/R/site-library/phangorn/tinytest/test_splits.R
/usr/lib/R/site-library/phangorn/tinytest/test_superTree.R
/usr/lib/R/site-library/phangorn/tinytest/test_treeManipulation.R
/usr/lib/R/site-library/phangorn/tinytest/test_treeRearrangement.R
/usr/lib/R/site-library/phangorn/tinytest/test_treedist.R
/usr/share/doc/r-cran-phangorn/README.md
/usr/share/doc/r-cran-phangorn/README.test
/usr/share/doc/r-cran-phangorn/changelog.Debian.gz
/usr/share/doc/r-cran-phangorn/changelog.gz
/usr/share/doc/r-cran-phangorn/copyright
/usr/share/doc/r-cran-phangorn/run-unit-test
/usr/share/doc/r-cran-phangorn/tests/testthat.R
/usr/share/doc/r-cran-phangorn/tests/testthat/_snaps/plot_ancestral/pie-plots.svg
/usr/share/doc/r-cran-phangorn/tests/testthat/_snaps/plot_networx/plot-networx.svg
/usr/share/doc/r-cran-phangorn/tests/testthat/_snaps/plot_pml/densitree.svg
/usr/share/doc/r-cran-phangorn/tests/testthat/_snaps/plot_pml/plot-pml.svg
/usr/share/doc/r-cran-phangorn/tests/testthat/test_plot_ancestral.R
/usr/share/doc/r-cran-phangorn/tests/testthat/test_plot_networx.R
/usr/share/doc/r-cran-phangorn/tests/testthat/test_plot_pml.R
/usr/share/doc/r-cran-phangorn/tests/tinytest.R