Package - r-bioc-variantannotation
Package: r-bioc-variantannotation
apt-get install r-bioc-variantannotation
apt-get install r-bioc-variantannotation
Documentations in package:
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.52.0-2_amd64.deb (Size: 3.4MiB)| Property | Value |
|---|---|
| Package | r-bioc-variantannotation |
| Version | 1.52.0-2 |
| Installed-Size | 6805 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | amd64 |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 2.19.1), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi (>= 1.27.9), r-bioc-rtracklayer (>= 1.39.7), r-bioc-bsgenome (>= 1.47.3), r-bioc-genomicfeatures (>= 1.31.3), r-bioc-rhtslib (>= 2.99.0), libbz2-1.0, libc6 (>= 2.34), libcurl4t64 (>= 7.18.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.2.3.3) |
| Suggests | r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2, r-bioc-biocstyle, r-cran-knitr, r-cran-magick, r-cran-jsonlite, r-cran-httr |
| Description | BioConductor annotation of genetic variants |
| Description-md5 | 17670e83de551a30abddcb85706e9bf5 |
| Homepage | https://bioconductor.org/packages/VariantAnnotation/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.52.0-2_amd64.deb |
| Size | 3548708 |
| MD5sum | 4f065433ad1e1c398fd862de1f39d38c |
| SHA256 | dd74b34e242b95ca1c3ab1286687ebbdd7f6c993d188e6360a8fc304c14fb708 |
Files in package
- /usr/lib/R/site-library/VariantAnnotation/CITATION
- /usr/lib/R/site-library/VariantAnnotation/DESCRIPTION
- /usr/lib/R/site-library/VariantAnnotation/INDEX
- /usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/features.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/links.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/nsInfo.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/package.rds
- /usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds
- /usr/lib/R/site-library/VariantAnnotation/NAMESPACE
- /usr/lib/R/site-library/VariantAnnotation/NEWS
- /usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation
- /usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb
- /usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdx
- /usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R
- /usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rmd
- /usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.html
- /usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.R
- /usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.Rmd
- /usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.html
- /usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R
- /usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rmd
- /usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.html
- /usr/lib/R/site-library/VariantAnnotation/doc/index.html
- /usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz
- /usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
- /usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz
- /usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi
- /usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf
- /usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf
- /usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz
- /usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi
- /usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz
- /usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi
- /usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf
- /usr/lib/R/site-library/VariantAnnotation/help/AnIndex
- /usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb
- /usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx
- /usr/lib/R/site-library/VariantAnnotation/help/aliases.rds
- /usr/lib/R/site-library/VariantAnnotation/help/paths.rds
- /usr/lib/R/site-library/VariantAnnotation/html/00Index.html
- /usr/lib/R/site-library/VariantAnnotation/html/R.css
- /usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so
- /usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/buffer_realloc.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/ex1-seq1-90.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/meta_header.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_vcfFields.R
- /usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R
- /usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz
- /usr/share/doc/r-bioc-variantannotation/copyright