Package - r-bioc-structuralvariantannotation

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-structuralvariantannotation/r-bioc-structuralvariantannotation_1.22.0+ds-2_all.deb (Size: 391.6KiB)

Property	Value
Package	r-bioc-structuralvariantannotation
Version	1.22.0+ds-2
Installed-Size	1297
Maintainer	Debian R Packages Maintainers
Architecture	all
Depends	r-api-4.0, r-api-bioc-3.20, r-bioc-genomicranges, r-bioc-rtracklayer, r-bioc-variantannotation, r-bioc-biocgenerics, r-cran-assertthat, r-bioc-biostrings, r-bioc-pwalign, r-cran-stringr, r-cran-dplyr, r-cran-rlang, r-bioc-genomicfeatures, r-bioc-iranges, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-genomeinfodb
Suggests	r-cran-ggplot2, r-cran-devtools, r-cran-testthat (>= 2.1.0), r-cran-roxygen2, r-cran-rmarkdown, r-cran-tidyverse, r-cran-knitr, r-bioc-ggbio, r-bioc-biovizbase
Description	Variant annotations for structural variants
Description-md5	da0d30e1c2fddfc05ec9f7a5a97d4001
Homepage	https://bioconductor.org/packages/StructuralVariantAnnotation/
Section	gnu-r
Priority	optional
Filename	pool/main/r/r-bioc-structuralvariantannotation/r-bioc-structuralvariantannotation_1.22.0+ds-2_all.deb
Size	401032
MD5sum	02f3afd5f64221b4d8fa82a4e5edf468
SHA256	39cb0fad90aeb0f32a9d187750aa5f4fa3d74c95c1c2cb7bbcea5aa9f0873d30

Files in package

• /usr/lib/R/site-library/StructuralVariantAnnotation/DESCRIPTION
• /usr/lib/R/site-library/StructuralVariantAnnotation/INDEX
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/Rd.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/features.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/hsearch.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/links.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/nsInfo.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/package.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/Meta/vignette.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/NAMESPACE
• /usr/lib/R/site-library/StructuralVariantAnnotation/NEWS
• /usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation
• /usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation.rdb
• /usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation.rdx
• /usr/lib/R/site-library/StructuralVariantAnnotation/doc/index.html
• /usr/lib/R/site-library/StructuralVariantAnnotation/doc/vignettes.R
• /usr/lib/R/site-library/StructuralVariantAnnotation/doc/vignettes.Rmd
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829.10X.longranger.largeSVs.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829.nanopore.sniffles.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829T.purple.sv.ann.vcf.gz
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/MT.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/breakdancer-1.4.5.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/breakend.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_nanoSV_truth_overlap.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_gridss.vcf.gz
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_manta.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_novobreak.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/crest.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/delly-0.6.8.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss-missingPartner.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss-na12878.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss.bedpe
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/manta-0.29.6.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/manta-1.1.1.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/multipleAltSVs.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_Sudmunt2015.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_crest.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_hydra.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/pindel-0.2.5b6.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/representations.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/simple.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/tigra-0.3.7.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/truthset_somaticSVs_COLO829.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/unnamed.bedpe
• /usr/lib/R/site-library/StructuralVariantAnnotation/extdata/vcf4.2.example.sv.vcf
• /usr/lib/R/site-library/StructuralVariantAnnotation/help/AnIndex
• /usr/lib/R/site-library/StructuralVariantAnnotation/help/StructuralVariantAnnotation.rdb
• /usr/lib/R/site-library/StructuralVariantAnnotation/help/StructuralVariantAnnotation.rdx
• /usr/lib/R/site-library/StructuralVariantAnnotation/help/aliases.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/help/paths.rds
• /usr/lib/R/site-library/StructuralVariantAnnotation/html/00Index.html
• /usr/lib/R/site-library/StructuralVariantAnnotation/html/R.css
• /usr/share/doc/r-bioc-structuralvariantannotation/changelog.Debian.gz
• /usr/share/doc/r-bioc-structuralvariantannotation/copyright