Package - r-bioc-shortread
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-shortread/r-bioc-shortread_1.64.0-3_amd64.deb (Size: 5.0MiB)| Property | Value |
|---|---|
| Package | r-bioc-shortread |
| Version | 1.64.0-3 |
| Installed-Size | 8210 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | amd64 |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-bioc-pwalign, r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector, r-bioc-rhtslib, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) |
| Suggests | r-bioc-biocstyle, r-cran-runit, r-bioc-biomart, r-bioc-genomicfeatures, r-cran-knitr |
| Description | GNU R classes and methods for high-throughput short-read sequencing data |
| Description-md5 | 1c554de1b3611a116df744777d39ea79 |
| Homepage | https://bioconductor.org/packages/ShortRead/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-shortread/r-bioc-shortread_1.64.0-3_amd64.deb |
| Size | 5219808 |
| MD5sum | e19c51bc6697377805b8d3b24d898f1b |
| SHA256 | ecb7f60bf6f2ab278508e9e1c96b07c07595b32e568323b876ab9c699434476a |
Files in package
- /usr/lib/R/site-library/ShortRead/CITATION
- /usr/lib/R/site-library/ShortRead/DESCRIPTION
- /usr/lib/R/site-library/ShortRead/INDEX
- /usr/lib/R/site-library/ShortRead/Meta/Rd.rds
- /usr/lib/R/site-library/ShortRead/Meta/features.rds
- /usr/lib/R/site-library/ShortRead/Meta/hsearch.rds
- /usr/lib/R/site-library/ShortRead/Meta/links.rds
- /usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds
- /usr/lib/R/site-library/ShortRead/Meta/package.rds
- /usr/lib/R/site-library/ShortRead/Meta/vignette.rds
- /usr/lib/R/site-library/ShortRead/NAMESPACE
- /usr/lib/R/site-library/ShortRead/NEWS
- /usr/lib/R/site-library/ShortRead/R/ShortRead
- /usr/lib/R/site-library/ShortRead/R/ShortRead.rdb
- /usr/lib/R/site-library/ShortRead/R/ShortRead.rdx
- /usr/lib/R/site-library/ShortRead/doc/Overview.R
- /usr/lib/R/site-library/ShortRead/doc/Overview.Rmd
- /usr/lib/R/site-library/ShortRead/doc/Overview.html
- /usr/lib/R/site-library/ShortRead/doc/index.html
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt
- /usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt
- /usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz
- /usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz
- /usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt
- /usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt
- /usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.2.txt
- /usr/lib/R/site-library/ShortRead/help/AnIndex
- /usr/lib/R/site-library/ShortRead/help/ShortRead.rdb
- /usr/lib/R/site-library/ShortRead/help/ShortRead.rdx
- /usr/lib/R/site-library/ShortRead/help/aliases.rds
- /usr/lib/R/site-library/ShortRead/help/paths.rds
- /usr/lib/R/site-library/ShortRead/html/00Index.html
- /usr/lib/R/site-library/ShortRead/html/R.css
- /usr/lib/R/site-library/ShortRead/libs/ShortRead.so
- /usr/lib/R/site-library/ShortRead/script/qa-test.R
- /usr/lib/R/site-library/ShortRead/template/0000-Header.html
- /usr/lib/R/site-library/ShortRead/template/1000-Overview.html
- /usr/lib/R/site-library/ShortRead/template/1100-Overview-SolexaRealign.html
- /usr/lib/R/site-library/ShortRead/template/2000-RunSummary.html
- /usr/lib/R/site-library/ShortRead/template/3000-ReadDistribution.html
- /usr/lib/R/site-library/ShortRead/template/4000-CycleSpecific.html
- /usr/lib/R/site-library/ShortRead/template/5000-PerTile.html
- /usr/lib/R/site-library/ShortRead/template/6000-Alignment.html
- /usr/lib/R/site-library/ShortRead/template/7000-MultipleAlignment.html
- /usr/lib/R/site-library/ShortRead/template/8000-DepthOfCoverage.html
- /usr/lib/R/site-library/ShortRead/template/9000-AdapterContamination.html
- /usr/lib/R/site-library/ShortRead/template/9999-Footer.html
- /usr/lib/R/site-library/ShortRead/template/QA.css
- /usr/lib/R/site-library/ShortRead/template/QAAdapterContamination.html
- /usr/lib/R/site-library/ShortRead/template/QAFiltered.html
- /usr/lib/R/site-library/ShortRead/template/QAFlagged.html
- /usr/lib/R/site-library/ShortRead/template/QAFooter.html
- /usr/lib/R/site-library/ShortRead/template/QAFrequentSequence.html
- /usr/lib/R/site-library/ShortRead/template/QAHeader.html
- /usr/lib/R/site-library/ShortRead/template/QANucleotideByCycle.html
- /usr/lib/R/site-library/ShortRead/template/QANucleotideUse.html
- /usr/lib/R/site-library/ShortRead/template/QAQualityByCycle.html
- /usr/lib/R/site-library/ShortRead/template/QAQualityUse.html
- /usr/lib/R/site-library/ShortRead/template/QAReadQuality.html
- /usr/lib/R/site-library/ShortRead/template/QASequenceUse.html
- /usr/lib/R/site-library/ShortRead/template/QASources.html
- /usr/lib/R/site-library/ShortRead/template/image/bioclogo-small.gif
- /usr/lib/R/site-library/ShortRead/template/qa_solexa.Rnw
- /usr/lib/R/site-library/ShortRead/unitTests/cases/PE_export.txt.gz
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_int_head.txt.p
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_nse_head.txt.p
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_pos_head.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_results_head.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.9_lines.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_head.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_run_as_factor.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_toIUPAC.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/sanger.fastq
- /usr/lib/R/site-library/ShortRead/unitTests/cases/soap.txt
- /usr/lib/R/site-library/ShortRead/unitTests/cases/solexa.fastq
- /usr/lib/R/site-library/ShortRead/unitTests/test_AlignedRead.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_AllClasses.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_FastqFile.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_Intensity.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SRError.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SRFilter.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SRFilterResult.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SRList.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SRVector.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_ShortRead.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_ShortReadQ.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_SolexaIntensity.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_append.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_coverage.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_filterFastq.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_functions.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_qa.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_readPrb.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_readQseq.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_readXStringColumns.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_renew.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_trimEnds.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_trimTails.R
- /usr/lib/R/site-library/ShortRead/unitTests/test_writeFastq.R
- /usr/share/doc/r-bioc-shortread/changelog.Debian.gz
- /usr/share/doc/r-bioc-shortread/copyright