Package - r-bioc-rsamtools
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-rsamtools/r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb (Size: 3.4MiB)| Property | Value |
|---|---|
| Package | r-bioc-rsamtools |
| Version | 2.22.0+dfsg-2 |
| Installed-Size | 5655 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | amd64 |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.31.8), r-bioc-biostrings (>= 2.47.6), r-bioc-biocgenerics (>= 0.25.1), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-xvector (>= 0.19.7), r-bioc-zlibbioc, r-cran-bitops, r-bioc-biocparallel, r-bioc-rhtslib (>= 2.99.1), libbz2-1.0, libc6 (>= 2.34), libcurl4t64 (>= 7.18.0), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3) |
| Suggests | r-bioc-genomicalignments, r-bioc-shortread (>= 1.19.10), r-bioc-genomicfeatures, r-cran-runit, r-bioc-biocstyle, r-cran-knitr |
| Description | GNU R binary alignment (BAM), variant call (BCF), or tabix file import |
| Description-md5 | 16bc50d4ff2150209ee7b17da529b215 |
| Homepage | https://bioconductor.org/packages/Rsamtools/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-rsamtools/r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb |
| Size | 3599688 |
| MD5sum | 4453d4ff2565a0a0f6f79e4ea9c6957c |
| SHA256 | 76e34292219003e32029af71758a2504b4fc866958eccc58413c861f8f7d4273 |
Files in package
- /usr/lib/R/site-library/Rsamtools/DESCRIPTION
- /usr/lib/R/site-library/Rsamtools/INDEX
- /usr/lib/R/site-library/Rsamtools/Meta/Rd.rds
- /usr/lib/R/site-library/Rsamtools/Meta/features.rds
- /usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds
- /usr/lib/R/site-library/Rsamtools/Meta/links.rds
- /usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds
- /usr/lib/R/site-library/Rsamtools/Meta/package.rds
- /usr/lib/R/site-library/Rsamtools/Meta/vignette.rds
- /usr/lib/R/site-library/Rsamtools/NAMESPACE
- /usr/lib/R/site-library/Rsamtools/NEWS
- /usr/lib/R/site-library/Rsamtools/R/Rsamtools
- /usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb
- /usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx
- /usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R
- /usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rmd
- /usr/lib/R/site-library/Rsamtools/doc/index.html
- /usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa
- /usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.bam
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz.csi
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.sam
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz
- /usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz.csi
- /usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz
- /usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi
- /usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam
- /usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.sam
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.sam
- /usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda
- /usr/lib/R/site-library/Rsamtools/extdata/pileup.txt
- /usr/lib/R/site-library/Rsamtools/extdata/querybins.bam
- /usr/lib/R/site-library/Rsamtools/extdata/querybins.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/querybins.sam
- /usr/lib/R/site-library/Rsamtools/extdata/revbins.bam
- /usr/lib/R/site-library/Rsamtools/extdata/revbins.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/revbins.sam
- /usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt
- /usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt
- /usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam
- /usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/tagfilter.sam
- /usr/lib/R/site-library/Rsamtools/extdata/tiny.bam
- /usr/lib/R/site-library/Rsamtools/extdata/tiny.bam.bai
- /usr/lib/R/site-library/Rsamtools/extdata/tiny.sam
- /usr/lib/R/site-library/Rsamtools/extdata/tophat/README
- /usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam
- /usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig
- /usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed
- /usr/lib/R/site-library/Rsamtools/help/AnIndex
- /usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb
- /usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx
- /usr/lib/R/site-library/Rsamtools/help/aliases.rds
- /usr/lib/R/site-library/Rsamtools/help/paths.rds
- /usr/lib/R/site-library/Rsamtools/html/00Index.html
- /usr/lib/R/site-library/Rsamtools/html/R.css
- /usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so
- /usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R
- /usr/lib/R/site-library/Rsamtools/scripts/features.R
- /usr/lib/R/site-library/Rsamtools/scripts/remote_test.R
- /usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/RNEXT.bam
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf.gz
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf.gz
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam
- /usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam.bai
- /usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_RsamtoolsFile.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_mapqfilter.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_phred2ASCIIOffset.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_nowhich.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_querybins.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_revbins.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_single_range.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_tagfilter.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_testPairedEndBam.R
- /usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R
- /usr/share/doc/r-bioc-rsamtools/changelog.Debian.gz
- /usr/share/doc/r-bioc-rsamtools/copyright