Package - r-bioc-rhtslib
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-rhtslib/r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb (Size: 1.3MiB)| Property | Value |
|---|---|
| Package | r-bioc-rhtslib |
| Version | 3.2.0+dfsg-2 |
| Installed-Size | 8723 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | amd64 |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-zlibbioc, libbz2-1.0, libc6 (>= 2.34), libcurl4t64 (>= 7.18.0), liblzma5 (>= 5.1.1alpha+20120614), zlib1g (>= 1:1.1.4) |
| Suggests | r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle |
| Description | HTSlib high-throughput sequencing library as GNU R package |
| Description-md5 | e537fb8fc3c4c7a1e6f53e4e1d521829 |
| Homepage | https://bioconductor.org/packages/Rhtslib/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-rhtslib/r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb |
| Size | 1334620 |
| MD5sum | 4e23e762c1ce71a7e7c4ae7f650ce8ba |
| SHA256 | 6d89867c65ded5667b8903dfcadf88b8440792d535dac1d859440d3b684e6ec9 |
Files in package
- /usr/lib/R/site-library/Rhtslib/DESCRIPTION
- /usr/lib/R/site-library/Rhtslib/INDEX
- /usr/lib/R/site-library/Rhtslib/Meta/Rd.rds
- /usr/lib/R/site-library/Rhtslib/Meta/features.rds
- /usr/lib/R/site-library/Rhtslib/Meta/hsearch.rds
- /usr/lib/R/site-library/Rhtslib/Meta/links.rds
- /usr/lib/R/site-library/Rhtslib/Meta/nsInfo.rds
- /usr/lib/R/site-library/Rhtslib/Meta/package.rds
- /usr/lib/R/site-library/Rhtslib/Meta/vignette.rds
- /usr/lib/R/site-library/Rhtslib/NAMESPACE
- /usr/lib/R/site-library/Rhtslib/NEWS
- /usr/lib/R/site-library/Rhtslib/R/Rhtslib
- /usr/lib/R/site-library/Rhtslib/R/Rhtslib.rdb
- /usr/lib/R/site-library/Rhtslib/R/Rhtslib.rdx
- /usr/lib/R/site-library/Rhtslib/doc/Rhtslib.R
- /usr/lib/R/site-library/Rhtslib/doc/Rhtslib.Rmd
- /usr/lib/R/site-library/Rhtslib/doc/index.html
- /usr/lib/R/site-library/Rhtslib/help/AnIndex
- /usr/lib/R/site-library/Rhtslib/help/Rhtslib.rdb
- /usr/lib/R/site-library/Rhtslib/help/Rhtslib.rdx
- /usr/lib/R/site-library/Rhtslib/help/aliases.rds
- /usr/lib/R/site-library/Rhtslib/help/paths.rds
- /usr/lib/R/site-library/Rhtslib/html/00Index.html
- /usr/lib/R/site-library/Rhtslib/html/R.css
- /usr/lib/R/site-library/Rhtslib/include/README
- /usr/lib/R/site-library/Rhtslib/include/bam.c
- /usr/lib/R/site-library/Rhtslib/include/bam.h
- /usr/lib/R/site-library/Rhtslib/include/bam_cat.c
- /usr/lib/R/site-library/Rhtslib/include/bam_plbuf.c
- /usr/lib/R/site-library/Rhtslib/include/bam_plbuf.h
- /usr/lib/R/site-library/Rhtslib/include/bam_sort.c
- /usr/lib/R/site-library/Rhtslib/include/bam_sort.h
- /usr/lib/R/site-library/Rhtslib/include/bedidx.c
- /usr/lib/R/site-library/Rhtslib/include/bedidx.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/bgzf.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/cram.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/faidx.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hfile.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts_defs.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts_endian.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts_expr.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts_log.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/hts_os.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/kbitset.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/kfunc.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/khash.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/khash_str2int.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/klist.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/knetfile.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/kroundup.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/kseq.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/ksort.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/kstring.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/regidx.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/sam.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/synced_bcf_reader.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/tbx.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/thread_pool.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/vcf.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/vcf_sweep.h
- /usr/lib/R/site-library/Rhtslib/include/htslib/vcfutils.h
- /usr/lib/R/site-library/Rhtslib/include/sam_opts.c
- /usr/lib/R/site-library/Rhtslib/include/sam_opts.h
- /usr/lib/R/site-library/Rhtslib/include/sam_utils.c
- /usr/lib/R/site-library/Rhtslib/include/sam_utils.h
- /usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h
- /usr/lib/R/site-library/Rhtslib/include/samtools.h
- /usr/lib/R/site-library/Rhtslib/libs/Rhtslib.so
- /usr/lib/R/site-library/Rhtslib/testdata/auxf#values.sam
- /usr/lib/R/site-library/Rhtslib/testdata/auxf#values_java.cram
- /usr/lib/R/site-library/Rhtslib/testdata/auxf.fa
- /usr/lib/R/site-library/Rhtslib/testdata/auxf.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/c1#bounds.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#clip.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#noseq.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#pad1.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#pad2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#pad3.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1#unknown.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c1.fa
- /usr/lib/R/site-library/Rhtslib/testdata/c1.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/c2#pad.sam
- /usr/lib/R/site-library/Rhtslib/testdata/c2.fa
- /usr/lib/R/site-library/Rhtslib/testdata/c2.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/ce#1.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#1000.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#5.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#5b.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#5b_java.cram
- /usr/lib/R/site-library/Rhtslib/testdata/ce#large_seq.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#supp.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#tag_depadded.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#tag_padded.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#unmap.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#unmap1.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce#unmap2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/ce.fa
- /usr/lib/R/site-library/Rhtslib/testdata/ce.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/colons.bam
- /usr/lib/R/site-library/Rhtslib/testdata/fieldarith.sam
- /usr/lib/R/site-library/Rhtslib/testdata/formatcols.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/formatmissing-out.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/formatmissing.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/index.sam
- /usr/lib/R/site-library/Rhtslib/testdata/index.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/index2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/index_dos.sam
- /usr/lib/R/site-library/Rhtslib/testdata/md#1.sam
- /usr/lib/R/site-library/Rhtslib/testdata/md.fa
- /usr/lib/R/site-library/Rhtslib/testdata/md.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/modhdr.expected.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/no_hdr_sq_1.bam
- /usr/lib/R/site-library/Rhtslib/testdata/no_hdr_sq_1.expected.sam
- /usr/lib/R/site-library/Rhtslib/testdata/noroundtrip-out.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/noroundtrip.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/range.bam
- /usr/lib/R/site-library/Rhtslib/testdata/range.cram
- /usr/lib/R/site-library/Rhtslib/testdata/realn01.fa
- /usr/lib/R/site-library/Rhtslib/testdata/realn01.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/realn01.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn01_exp-a.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn01_exp-e.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn01_exp.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn02-r.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn02.fa
- /usr/lib/R/site-library/Rhtslib/testdata/realn02.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/realn02.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn02_exp-a.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn02_exp-e.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn02_exp.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn03.fa
- /usr/lib/R/site-library/Rhtslib/testdata/realn03.fa.fai
- /usr/lib/R/site-library/Rhtslib/testdata/realn03.sam
- /usr/lib/R/site-library/Rhtslib/testdata/realn03_exp.sam
- /usr/lib/R/site-library/Rhtslib/testdata/tabix/bed_file.bed
- /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff
- /usr/lib/R/site-library/Rhtslib/testdata/tabix/large_chr.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/tabix/vcf_file.bcf
- /usr/lib/R/site-library/Rhtslib/testdata/tabix/vcf_file.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/test-vcf-hdr-in.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/vcf_meta_meta.vcf
- /usr/lib/R/site-library/Rhtslib/testdata/xx#MD.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#MD2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#blank.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#large_aux_java.cram
- /usr/lib/R/site-library/Rhtslib/testdata/xx#minimal.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#pair.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#repeated.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#rg.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#tlen.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#tlen2.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#triplet.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx#unsorted.sam
- /usr/lib/R/site-library/Rhtslib/testdata/xx.fa
- /usr/lib/R/site-library/Rhtslib/testdata/xx.fa.fai
- /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a
- /usr/lib/R/site-library/Rhtslib/usrlib/libhts.so
- /usr/lib/R/site-library/Rhtslib/usrlib/libhts.so.2
- /usr/share/doc/r-bioc-rhtslib/changelog.Debian.gz
- /usr/share/doc/r-bioc-rhtslib/copyright