Package - r-bioc-purecn

Package:  r-bioc-purecn
apt-get install r-bioc-purecn
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-purecn/r-bioc-purecn_2.12.0+dfsg-2_all.deb (Size: 5.7MiB)

PropertyValue
Packager-bioc-purecn
Version2.12.0+dfsg-2
Installed-Size6928
MaintainerDebian R Packages Maintainers
Architectureall
Dependsr-api-4.0, r-api-bioc-3.20, r-bioc-dnacopy, r-bioc-variantannotation (>= 1.14.1), r-bioc-genomicranges (>= 1.20.3), r-bioc-iranges (>= 2.2.1), r-cran-rcolorbrewer, r-bioc-s4vectors, r-cran-data.table, r-bioc-summarizedexperiment, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-rsamtools, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-rtracklayer, r-cran-ggplot2, r-cran-gridextra, r-cran-futile.logger, r-cran-vgam, r-cran-mclust, r-bioc-rhdf5, r-cran-matrix
Suggestsr-bioc-biocparallel, r-bioc-biocstyle, r-cran-pscbs, r-cran-r.utils, r-cran-covr, r-cran-knitr, r-cran-optparse, r-bioc-org.hs.eg.db, r-cran-jsonlite, r-cran-markdown, r-cran-rmarkdown, r-cran-testthat
Descriptioncopy number calling and SNV classification using targeted short read sequencing
Description-md58e04360f54e8e8be0dd9281fc8ab5c7b
Homepagehttps://bioconductor.org/packages/PureCN/
Sectiongnu-r
Priorityoptional
Filenamepool/main/r/r-bioc-purecn/r-bioc-purecn_2.12.0+dfsg-2_all.deb
Size6025000
MD5sum5d3ae04cf2842071a5b2fb8662a48902
SHA256bf2761291ef8521f580087e30a25732bb5298973adddc5e2197f16c4600845f5

Files in package

  • /usr/lib/R/site-library/PureCN/CITATION
  • /usr/lib/R/site-library/PureCN/DESCRIPTION
  • /usr/lib/R/site-library/PureCN/INDEX
  • /usr/lib/R/site-library/PureCN/Meta/Rd.rds
  • /usr/lib/R/site-library/PureCN/Meta/data.rds
  • /usr/lib/R/site-library/PureCN/Meta/features.rds
  • /usr/lib/R/site-library/PureCN/Meta/hsearch.rds
  • /usr/lib/R/site-library/PureCN/Meta/links.rds
  • /usr/lib/R/site-library/PureCN/Meta/nsInfo.rds
  • /usr/lib/R/site-library/PureCN/Meta/package.rds
  • /usr/lib/R/site-library/PureCN/Meta/vignette.rds
  • /usr/lib/R/site-library/PureCN/NAMESPACE
  • /usr/lib/R/site-library/PureCN/NEWS
  • /usr/lib/R/site-library/PureCN/R/PureCN
  • /usr/lib/R/site-library/PureCN/R/PureCN.rdb
  • /usr/lib/R/site-library/PureCN/R/PureCN.rdx
  • /usr/lib/R/site-library/PureCN/data/centromeres.rda
  • /usr/lib/R/site-library/PureCN/data/purecn.DNAcopy.bdry.rda
  • /usr/lib/R/site-library/PureCN/data/purecn.example.output.rda
  • /usr/lib/R/site-library/PureCN/doc/PureCN.R
  • /usr/lib/R/site-library/PureCN/doc/PureCN.pdf
  • /usr/lib/R/site-library/PureCN/doc/Quick.R
  • /usr/lib/R/site-library/PureCN/doc/index.html
  • /usr/lib/R/site-library/PureCN/extdata/BenchmarkTumorOnly.R
  • /usr/lib/R/site-library/PureCN/extdata/Coverage.R
  • /usr/lib/R/site-library/PureCN/extdata/Dx.R
  • /usr/lib/R/site-library/PureCN/extdata/FilterCallableLoci.R
  • /usr/lib/R/site-library/PureCN/extdata/IntervalFile.R
  • /usr/lib/R/site-library/PureCN/extdata/NormalDB.R
  • /usr/lib/R/site-library/PureCN/extdata/PureCN.R
  • /usr/lib/R/site-library/PureCN/extdata/buggy_cnvkit.seg.gz
  • /usr/lib/R/site-library/PureCN/extdata/dist/calculateSbdry.R
  • /usr/lib/R/site-library/PureCN/extdata/dist/downloadCentromeres.R
  • /usr/lib/R/site-library/PureCN/extdata/ex1.bam
  • /usr/lib/R/site-library/PureCN/extdata/ex1.bam.bai
  • /usr/lib/R/site-library/PureCN/extdata/ex1_gcgene.txt
  • /usr/lib/R/site-library/PureCN/extdata/ex1_intervals.txt
  • /usr/lib/R/site-library/PureCN/extdata/ex1_intervals_headered.txt
  • /usr/lib/R/site-library/PureCN/extdata/ex2_intervals.bed
  • /usr/lib/R/site-library/PureCN/extdata/ex2_intervals.txt
  • /usr/lib/R/site-library/PureCN/extdata/ex2_mappability.bed
  • /usr/lib/R/site-library/PureCN/extdata/ex2_mappability.bigWig
  • /usr/lib/R/site-library/PureCN/extdata/ex2_reference.fa
  • /usr/lib/R/site-library/PureCN/extdata/ex2_reference.fa.fai
  • /usr/lib/R/site-library/PureCN/extdata/ex2_reptiming.bed
  • /usr/lib/R/site-library/PureCN/extdata/ex3_intervals.bed
  • /usr/lib/R/site-library/PureCN/extdata/ex3_mappability.bed
  • /usr/lib/R/site-library/PureCN/extdata/ex3_reference.fa
  • /usr/lib/R/site-library/PureCN/extdata/ex3_reference.fa.fai
  • /usr/lib/R/site-library/PureCN/extdata/example.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_allelic_counts.tsv
  • /usr/lib/R/site-library/PureCN/extdata/example_callable.bed.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_cosmic.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_cosmic.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/example_gatk4_denoised_cr.tsv.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_gatk4_modelfinal.seg.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_intervals.txt
  • /usr/lib/R/site-library/PureCN/extdata/example_intervals_tiny.txt
  • /usr/lib/R/site-library/PureCN/extdata/example_intervals_tiny_ot.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_logratio.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_mutect2.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_mutect2.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/example_normal.list
  • /usr/lib/R/site-library/PureCN/extdata/example_normal.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_normal2.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_normal3.cnn
  • /usr/lib/R/site-library/PureCN/extdata/example_normal4.cnr
  • /usr/lib/R/site-library/PureCN/extdata/example_normal5.hdf5
  • /usr/lib/R/site-library/PureCN/extdata/example_normal_tiny.txt
  • /usr/lib/R/site-library/PureCN/extdata/example_seg.txt
  • /usr/lib/R/site-library/PureCN/extdata/example_single.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_single.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/example_tumor.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_tumor2.txt.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_tumor_tiny.txt
  • /usr/lib/R/site-library/PureCN/extdata/example_vcf.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/example_vcf.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/gatk4_m2_test_pon_db.tgz
  • /usr/lib/R/site-library/PureCN/extdata/gatk4_pon_db.tgz
  • /usr/lib/R/site-library/PureCN/extdata/issue109.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/issue184.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/issue184_2.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/issue184_2_mb.rds
  • /usr/lib/R/site-library/PureCN/extdata/issue192_tumor.cnr
  • /usr/lib/R/site-library/PureCN/extdata/issue192_tumor.seg
  • /usr/lib/R/site-library/PureCN/extdata/issue62.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/issue62.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/normalpanel.vcf.gz
  • /usr/lib/R/site-library/PureCN/extdata/normalpanel.vcf.gz.tbi
  • /usr/lib/R/site-library/PureCN/extdata/test_coverage_overlapping_intervals.txt
  • /usr/lib/R/site-library/PureCN/help/AnIndex
  • /usr/lib/R/site-library/PureCN/help/PureCN.rdb
  • /usr/lib/R/site-library/PureCN/help/PureCN.rdx
  • /usr/lib/R/site-library/PureCN/help/aliases.rds
  • /usr/lib/R/site-library/PureCN/help/paths.rds
  • /usr/lib/R/site-library/PureCN/html/00Index.html
  • /usr/lib/R/site-library/PureCN/html/R.css
  • /usr/share/doc/r-bioc-purecn/changelog.Debian.gz
  • /usr/share/doc/r-bioc-purecn/copyright