Package - r-bioc-phyloseq

Package:  r-bioc-phyloseq
apt-get install r-bioc-phyloseq
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-phyloseq/r-bioc-phyloseq_1.50.0+dfsg-2_all.deb (Size: 2.2MiB)

PropertyValue
Packager-bioc-phyloseq
Version1.50.0+dfsg-2
Installed-Size3134
MaintainerDebian R Packages Maintainers
Architectureall
Dependsr-api-4.0, r-api-bioc-3.20, r-cran-ade4 (>= 1.7-4), r-cran-ape (>= 5.0), r-bioc-biobase (>= 2.36.2), r-bioc-biocgenerics (>= 0.22.0), r-bioc-biomformat (>= 1.0.0), r-bioc-biostrings (>= 2.40.0), r-cran-cluster (>= 2.0.4), r-cran-data.table (>= 1.10.4), r-cran-foreach (>= 1.4.3), r-cran-ggplot2 (>= 2.1.0), r-cran-igraph (>= 1.0.1), r-bioc-multtest (>= 2.28.0), r-cran-plyr (>= 1.8.3), r-cran-reshape2 (>= 1.4.1), r-cran-scales (>= 0.4.0), r-cran-vegan (>= 2.5)
Suggestsr-bioc-biocstyle (>= 2.4), r-bioc-deseq2 (>= 1.16.1), r-bioc-genefilter (>= 1.58), r-cran-knitr (>= 1.16), r-cran-magrittr (>= 1.5), r-bioc-metagenomeseq (>= 1.14), r-cran-rmarkdown (>= 1.6), r-cran-testthat (>= 1.0.2)
DescriptionGNU R handling and analysis of high-throughput microbiome census data
Description-md5ce1efdc42d4cdfd64fc0152b75e33d3f
Homepagehttps://bioconductor.org/packages/phyloseq/
Sectiongnu-r
Priorityoptional
Filenamepool/main/r/r-bioc-phyloseq/r-bioc-phyloseq_1.50.0+dfsg-2_all.deb
Size2255164
MD5sumc8cb3240eb4b3a83221df416408191e2
SHA2562806dacca7b4be8488bb2ae0a0f24d85e39e39e24cc634437fb56ba4f95d27a6

Files in package

  • /usr/lib/R/site-library/phyloseq/CITATION
  • /usr/lib/R/site-library/phyloseq/DESCRIPTION
  • /usr/lib/R/site-library/phyloseq/INDEX
  • /usr/lib/R/site-library/phyloseq/Meta/Rd.rds
  • /usr/lib/R/site-library/phyloseq/Meta/data.rds
  • /usr/lib/R/site-library/phyloseq/Meta/features.rds
  • /usr/lib/R/site-library/phyloseq/Meta/hsearch.rds
  • /usr/lib/R/site-library/phyloseq/Meta/links.rds
  • /usr/lib/R/site-library/phyloseq/Meta/nsInfo.rds
  • /usr/lib/R/site-library/phyloseq/Meta/package.rds
  • /usr/lib/R/site-library/phyloseq/Meta/vignette.rds
  • /usr/lib/R/site-library/phyloseq/NAMESPACE
  • /usr/lib/R/site-library/phyloseq/NEWS
  • /usr/lib/R/site-library/phyloseq/R/phyloseq
  • /usr/lib/R/site-library/phyloseq/R/phyloseq.rdb
  • /usr/lib/R/site-library/phyloseq/R/phyloseq.rdx
  • /usr/lib/R/site-library/phyloseq/data/GlobalPatterns.RData
  • /usr/lib/R/site-library/phyloseq/data/datalist
  • /usr/lib/R/site-library/phyloseq/data/enterotype.RData
  • /usr/lib/R/site-library/phyloseq/data/esophagus.RData
  • /usr/lib/R/site-library/phyloseq/data/soilrep.RData
  • /usr/lib/R/site-library/phyloseq/doc/Unweighted_UniFrac.RData
  • /usr/lib/R/site-library/phyloseq/doc/index.html
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.R
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.Rmd
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.R
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.Rmd
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.R
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.Rmd
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.R
  • /usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.Rmd
  • /usr/lib/R/site-library/phyloseq/extdata/GP_otu_table_rand_short.txt.gz
  • /usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz
  • /usr/lib/R/site-library/phyloseq/extdata/biom-refseq.fasta
  • /usr/lib/R/site-library/phyloseq/extdata/biom-tree.phy
  • /usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.list.gz
  • /usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.shared.gz
  • /usr/lib/R/site-library/phyloseq/extdata/esophagus.good.groups.gz
  • /usr/lib/R/site-library/phyloseq/extdata/esophagus.tree.gz
  • /usr/lib/R/site-library/phyloseq/extdata/gg13-5-73.tree.gz
  • /usr/lib/R/site-library/phyloseq/extdata/gp500-pycogent.py
  • /usr/lib/R/site-library/phyloseq/extdata/gp500-uuf.csv
  • /usr/lib/R/site-library/phyloseq/extdata/gp500-wuf.csv
  • /usr/lib/R/site-library/phyloseq/extdata/gp500-wufu.csv
  • /usr/lib/R/site-library/phyloseq/extdata/gp500test.env.txt
  • /usr/lib/R/site-library/phyloseq/extdata/gp500test.tree
  • /usr/lib/R/site-library/phyloseq/extdata/master_map.txt
  • /usr/lib/R/site-library/phyloseq/extdata/min_dense_otu_table.biom
  • /usr/lib/R/site-library/phyloseq/extdata/min_sparse_otu_table.biom
  • /usr/lib/R/site-library/phyloseq/extdata/mothur_example.cons.taxonomy.gz
  • /usr/lib/R/site-library/phyloseq/extdata/phyloseq.png
  • /usr/lib/R/site-library/phyloseq/extdata/qiime500-refseq.fasta
  • /usr/lib/R/site-library/phyloseq/extdata/rformat_dist_0.03.txt.gz
  • /usr/lib/R/site-library/phyloseq/extdata/rich_dense_otu_table.biom
  • /usr/lib/R/site-library/phyloseq/extdata/rich_sparse_otu_table.biom
  • /usr/lib/R/site-library/phyloseq/extdata/study_1457_split_library_seqs_and_mapping.zip
  • /usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.tar.gz
  • /usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.zip
  • /usr/lib/R/site-library/phyloseq/extdata/study_gp.txt
  • /usr/lib/R/site-library/phyloseq/extdata/usearch.uc
  • /usr/lib/R/site-library/phyloseq/help/AnIndex
  • /usr/lib/R/site-library/phyloseq/help/aliases.rds
  • /usr/lib/R/site-library/phyloseq/help/paths.rds
  • /usr/lib/R/site-library/phyloseq/help/phyloseq.rdb
  • /usr/lib/R/site-library/phyloseq/help/phyloseq.rdx
  • /usr/lib/R/site-library/phyloseq/html/00Index.html
  • /usr/lib/R/site-library/phyloseq/html/R.css
  • /usr/lib/R/site-library/phyloseq/scripts/installer.R
  • /usr/share/doc/r-bioc-phyloseq/changelog.Debian.gz
  • /usr/share/doc/r-bioc-phyloseq/copyright