Package - r-bioc-mutationalpatterns
Package: r-bioc-mutationalpatterns
apt-get install r-bioc-mutationalpatterns
apt-get install r-bioc-mutationalpatterns
Documentations in package:
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.16.0+dfsg-2_all.deb (Size: 2.4MiB)| Property | Value |
|---|---|
| Package | r-bioc-mutationalpatterns |
| Version | 3.16.0+dfsg-2 |
| Installed-Size | 4610 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | all |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-genomicranges (>= 1.24.0), r-cran-nmf (>= 0.20.6), r-bioc-s4vectors, r-bioc-biocgenerics (>= 0.18.0), r-bioc-bsgenome (>= 1.40.0), r-bioc-variantannotation (>= 1.18.1), r-cran-dplyr (>= 0.8.3), r-cran-tibble (>= 2.1.3), r-cran-purrr (>= 0.3.2), r-cran-tidyr (>= 1.0.0), r-cran-stringr (>= 1.4.0), r-cran-magrittr (>= 1.5), r-cran-ggplot2 (>= 2.1.0), r-cran-pracma (>= 1.8.8), r-bioc-iranges (>= 2.6.0), r-bioc-genomeinfodb (>= 1.12.0), r-bioc-biostrings (>= 2.40.0), r-cran-ggdendro (>= 0.1-20), r-cran-cowplot (>= 0.9.2), r-cran-ggalluvial (>= 0.12.2), r-cran-rcolorbrewer |
| Suggests | r-bioc-biocstyle (>= 2.0.3), r-bioc-biomart (>= 2.28.0), r-cran-gridextra (>= 2.2.1), r-bioc-rtracklayer (>= 1.32.2), r-bioc-genomicfeatures, r-bioc-annotationdbi, r-cran-testthat, r-cran-knitr, r-cran-rmarkdown |
| Description | GNU R comprehensive genome-wide analysis of mutational processes |
| Description-md5 | df77cf7ee6fedf752a634a6c8a0008c4 |
| Homepage | https://bioconductor.org/packages/MutationalPatterns/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-mutationalpatterns/r-bioc-mutationalpatterns_3.16.0+dfsg-2_all.deb |
| Size | 2489596 |
| MD5sum | ae4d0b8ecf50c1b05d58b6cb26fde6a2 |
| SHA256 | c579ed1c2fd56e282ed60c34645069315f56d0528c7969c037f93835319a7385 |
Files in package
- /usr/lib/R/site-library/MutationalPatterns/CITATION
- /usr/lib/R/site-library/MutationalPatterns/DESCRIPTION
- /usr/lib/R/site-library/MutationalPatterns/INDEX
- /usr/lib/R/site-library/MutationalPatterns/Meta/Rd.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/features.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/hsearch.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/links.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/nsInfo.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/package.rds
- /usr/lib/R/site-library/MutationalPatterns/Meta/vignette.rds
- /usr/lib/R/site-library/MutationalPatterns/NAMESPACE
- /usr/lib/R/site-library/MutationalPatterns/NEWS
- /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns
- /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdb
- /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdx
- /usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.R
- /usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.Rmd
- /usr/lib/R/site-library/MutationalPatterns/doc/index.html
- /usr/lib/R/site-library/MutationalPatterns/extdata/ReplicationDirectionRegions.bed
- /usr/lib/R/site-library/MutationalPatterns/extdata/blood-AC.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/blood-ACC55.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/blood-BCH.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/callableloci-sample.bed
- /usr/lib/R/site-library/MutationalPatterns/extdata/colon1-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/colon2-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/colon3-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/duplicate.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/empty.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/intestine1-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/intestine2-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/intestine3-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/liver1-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/liver2-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/liver3-sample.vcf
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/SIGNAL_conversion_matrix.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.1_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_SIGNAL_exposure.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.1_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.1_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_exposure.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_tissue.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SPARSE_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt
- /usr/lib/R/site-library/MutationalPatterns/help/AnIndex
- /usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdb
- /usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdx
- /usr/lib/R/site-library/MutationalPatterns/help/aliases.rds
- /usr/lib/R/site-library/MutationalPatterns/help/paths.rds
- /usr/lib/R/site-library/MutationalPatterns/html/00Index.html
- /usr/lib/R/site-library/MutationalPatterns/html/R.css
- /usr/lib/R/site-library/MutationalPatterns/scripts/Format_signatures.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_dbs.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_indels.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_mbs.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_regulatory_regions.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_snvs.R
- /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_vcfs.R
- /usr/lib/R/site-library/MutationalPatterns/states/CTCF_g_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_dbs_counts.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs_context.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel_context.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_mbs.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_indel_counts.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_indels_counts_split_region.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_indels_longmatrix_split_region.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blood_mbs_counts.rds
- /usr/lib/R/site-library/MutationalPatterns/states/blosum62.rds
- /usr/lib/R/site-library/MutationalPatterns/states/bootstrapped_snv_refit.rds
- /usr/lib/R/site-library/MutationalPatterns/states/context_mismatches.rds
- /usr/lib/R/site-library/MutationalPatterns/states/dbs_refit.rds
- /usr/lib/R/site-library/MutationalPatterns/states/distr_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/grl_split_region.rds
- /usr/lib/R/site-library/MutationalPatterns/states/indel_refit.rds
- /usr/lib/R/site-library/MutationalPatterns/states/lesion_segregation.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data_extended.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_longregions.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_repli.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_s_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_splitregions.rds
- /usr/lib/R/site-library/MutationalPatterns/states/nmf_res_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/nmf_res_strand_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/promoter_flanking_g_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/promoter_g_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/read_vcfs_as_granges_output.rds
- /usr/lib/R/site-library/MutationalPatterns/states/regional_sims.rds
- /usr/lib/R/site-library/MutationalPatterns/states/regulatory_data.rds
- /usr/lib/R/site-library/MutationalPatterns/states/repli_strand.rds
- /usr/lib/R/site-library/MutationalPatterns/states/snv_refit.rds
- /usr/lib/R/site-library/MutationalPatterns/states/strict_best_snv_refit.rds
- /usr/lib/R/site-library/MutationalPatterns/states/strict_snv_refit.rds
- /usr/share/doc/r-bioc-mutationalpatterns/changelog.Debian.gz
- /usr/share/doc/r-bioc-mutationalpatterns/copyright