Package - r-bioc-monocle

Package:  r-bioc-monocle
apt-get install r-bioc-monocle
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-monocle/r-bioc-monocle_2.34.0-2_amd64.deb (Size: 1.5MiB)

PropertyValue
Packager-bioc-monocle
Version2.34.0-2
Installed-Size1766
MaintainerDebian R Packages Maintainers
Architectureamd64
Dependsr-api-4.0, r-api-bioc-3.20, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2 (>= 1.0.0), r-cran-vgam (>= 1.0-6), r-cran-ddrtree (>= 0.1.4), r-cran-igraph (>= 1.0.1), r-bioc-biocgenerics, r-bioc-hsmmsinglecell (>= 0.101.5), r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba (>= 2.0.0), r-cran-matrixstats, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-cran-leidenbase (>= 0.1.9), r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann (>= 2.5), r-cran-rcpp (>= 0.12.0), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 14)
Suggestsr-cran-hmisc, r-cran-knitr, r-cran-seurat, r-bioc-scater, r-cran-testthat
Descriptionclustering, differential expression, and trajectory analysis for RNA-Seq
Description-md5b7920263571f538286516ee16ed83a1e
Homepagehttps://bioconductor.org/packages/monocle/
Sectiongnu-r
Priorityoptional
Filenamepool/main/r/r-bioc-monocle/r-bioc-monocle_2.34.0-2_amd64.deb
Size1520628
MD5sum6fbff4ff9da7f28229f25a0386532a69
SHA25659ac092869760af9e9542c793e6fde343c11513d6d619dd4a9960f54df3c0622

Files in package

  • /usr/lib/R/site-library/monocle/CITATION
  • /usr/lib/R/site-library/monocle/DESCRIPTION
  • /usr/lib/R/site-library/monocle/INDEX
  • /usr/lib/R/site-library/monocle/Meta/Rd.rds
  • /usr/lib/R/site-library/monocle/Meta/data.rds
  • /usr/lib/R/site-library/monocle/Meta/features.rds
  • /usr/lib/R/site-library/monocle/Meta/hsearch.rds
  • /usr/lib/R/site-library/monocle/Meta/links.rds
  • /usr/lib/R/site-library/monocle/Meta/nsInfo.rds
  • /usr/lib/R/site-library/monocle/Meta/package.rds
  • /usr/lib/R/site-library/monocle/Meta/vignette.rds
  • /usr/lib/R/site-library/monocle/NAMESPACE
  • /usr/lib/R/site-library/monocle/NEWS
  • /usr/lib/R/site-library/monocle/R/monocle
  • /usr/lib/R/site-library/monocle/R/monocle.rdb
  • /usr/lib/R/site-library/monocle/R/monocle.rdx
  • /usr/lib/R/site-library/monocle/data/Rdata.rdb
  • /usr/lib/R/site-library/monocle/data/Rdata.rds
  • /usr/lib/R/site-library/monocle/data/Rdata.rdx
  • /usr/lib/R/site-library/monocle/doc/index.html
  • /usr/lib/R/site-library/monocle/doc/monocle-vignette.R
  • /usr/lib/R/site-library/monocle/doc/monocle-vignette.Rnw
  • /usr/lib/R/site-library/monocle/doc/monocle-vignette.pdf
  • /usr/lib/R/site-library/monocle/extdata/lung_exprs_data.RData
  • /usr/lib/R/site-library/monocle/extdata/lung_feature_data.RData
  • /usr/lib/R/site-library/monocle/extdata/lung_phenotype_data.RData
  • /usr/lib/R/site-library/monocle/help/AnIndex
  • /usr/lib/R/site-library/monocle/help/aliases.rds
  • /usr/lib/R/site-library/monocle/help/monocle.rdb
  • /usr/lib/R/site-library/monocle/help/monocle.rdx
  • /usr/lib/R/site-library/monocle/help/paths.rds
  • /usr/lib/R/site-library/monocle/html/00Index.html
  • /usr/lib/R/site-library/monocle/html/R.css
  • /usr/lib/R/site-library/monocle/libs/monocle.so
  • /usr/lib/R/site-library/monocle/tests/basic_tests.R
  • /usr/lib/R/site-library/monocle/tests/test.addCellType.R
  • /usr/lib/R/site-library/monocle/tests/test.calculateMarkerSpecificity.R
  • /usr/lib/R/site-library/monocle/tests/test.classifyCells.R
  • /usr/lib/R/site-library/monocle/tests/test.clusterCells.R
  • /usr/lib/R/site-library/monocle/tests/test.detectGenes.R
  • /usr/lib/R/site-library/monocle/tests/test.differentialGeneTest.R
  • /usr/lib/R/site-library/monocle/tests/test.dispersionTable.R
  • /usr/lib/R/site-library/monocle/tests/test.estimateDispersions.R
  • /usr/lib/R/site-library/monocle/tests/test.markerDiffTable.R
  • /usr/lib/R/site-library/monocle/tests/test.newCellDataSet.R
  • /usr/lib/R/site-library/monocle/tests/test.newCellTypeHierarchy.R
  • /usr/lib/R/site-library/monocle/tests/test.orderCells.R
  • /usr/lib/R/site-library/monocle/tests/test.plotCellTrajectory.R
  • /usr/lib/R/site-library/monocle/tests/test.plot_cell_clusters.R
  • /usr/lib/R/site-library/monocle/tests/test.plot_genes_jitter.R
  • /usr/lib/R/site-library/monocle/tests/test.plot_ordering_genes.R
  • /usr/lib/R/site-library/monocle/tests/test.plot_pc_variance_explained.R
  • /usr/lib/R/site-library/monocle/tests/test.reduceDimension.R
  • /usr/lib/R/site-library/monocle/tests/test.relative2abs.R
  • /usr/lib/R/site-library/monocle/tests/test.setOrderingFilter.R
  • /usr/share/doc/r-bioc-monocle/changelog.Debian.gz
  • /usr/share/doc/r-bioc-monocle/copyright