Package - r-bioc-genomicalignments
Package: r-bioc-genomicalignments
apt-get install r-bioc-genomicalignments
apt-get install r-bioc-genomicalignments
Documentations in package:
Primary informations
Download package: http://deb.debian.org/debian/pool/main/r/r-bioc-genomicalignments/r-bioc-genomicalignments_1.42.0-2_amd64.deb (Size: 2.1MiB)| Property | Value |
|---|---|
| Package | r-bioc-genomicalignments |
| Version | 1.42.0-2 |
| Installed-Size | 3397 |
| Maintainer | Debian R Packages Maintainers |
| Architecture | amd64 |
| Depends | r-api-4.0, r-api-bioc-3.20, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.13.1), r-bioc-genomicranges (>= 1.55.3), r-bioc-summarizedexperiment (>= 1.9.13), r-bioc-biostrings (>= 2.55.7), r-bioc-rsamtools (>= 1.31.2), r-bioc-biocparallel, libc6 (>= 2.4) |
| Suggests | r-bioc-shortread, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-deseq2, r-bioc-edger, r-cran-runit, r-cran-knitr, r-bioc-biocstyle |
| Description | BioConductor representation and manipulation of short genomic alignments |
| Description-md5 | d50adaf82639cc220ed4e6e1e258c6d5 |
| Homepage | https://bioconductor.org/packages/GenomicAlignments/ |
| Section | gnu-r |
| Priority | optional |
| Filename | pool/main/r/r-bioc-genomicalignments/r-bioc-genomicalignments_1.42.0-2_amd64.deb |
| Size | 2161100 |
| MD5sum | 04819432e9552ebcc6884a25cfd8f6e9 |
| SHA256 | ec544729027516e54ad41ed1a7cc8abbfec011249daf93b62a2a1b6bbc51282d |
Files in package
- /usr/lib/R/site-library/GenomicAlignments/CITATION
- /usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
- /usr/lib/R/site-library/GenomicAlignments/INDEX
- /usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/package.rds
- /usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds
- /usr/lib/R/site-library/GenomicAlignments/NAMESPACE
- /usr/lib/R/site-library/GenomicAlignments/NEWS
- /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
- /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb
- /usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
- /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
- /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
- /usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
- /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
- /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
- /usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
- /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
- /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rmd
- /usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.html
- /usr/lib/R/site-library/GenomicAlignments/doc/index.html
- /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
- /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw
- /usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
- /usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
- /usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
- /usr/lib/R/site-library/GenomicAlignments/help/AnIndex
- /usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
- /usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
- /usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
- /usr/lib/R/site-library/GenomicAlignments/help/paths.rds
- /usr/lib/R/site-library/GenomicAlignments/html/00Index.html
- /usr/lib/R/site-library/GenomicAlignments/html/R.css
- /usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
- /usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
- /usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
- /usr/share/doc/r-bioc-genomicalignments/copyright