Package - qcumber

Package:  qcumber
apt-get install qcumber
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/q/qcumber/qcumber_2.3.0-2_all.deb (Size: 49.3KiB)

PropertyValue
Packageqcumber
Version2.3.0-2
Installed-Size236
MaintainerDebian Med Packaging Team
Architectureall
Replacesqc-pipeline
Providesqc-pipeline
Dependspython3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake
Conflictsqc-pipeline
Descriptionquality control of genomic sequences
Description-md5380ba80499911de0a248a18cb1009872
Homepagehttps://gitlab.com/RKIBioinformaticsPipelines/QCumber
Sectionscience
Priorityoptional
Filenamepool/main/q/qcumber/qcumber_2.3.0-2_all.deb
Size50488
MD5sume8e75d1efdd4265bdbe9e121b7109314
SHA256033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb

Files in package

  • /etc/qcumber/adapters.fa
  • /etc/qcumber/config.txt
  • /etc/qcumber/parameter.txt
  • /usr/bin/qcumber
  • /usr/share/doc/qcumber/README.Debian
  • /usr/share/doc/qcumber/changelog.Debian.gz
  • /usr/share/doc/qcumber/changelog.gz
  • /usr/share/doc/qcumber/copyright
  • /usr/share/doc/qcumber/get-minikrakendb
  • /usr/share/doc/qcumber/readme.md.gz
  • /usr/share/lintian/overrides/qcumber
  • /usr/share/man/man1/qcumber.1.gz
  • /usr/share/python3/runtime.d/qcumber.rtupdate
  • /usr/share/qcumber/QCumber-2
  • /usr/share/qcumber/Rscripts/barplot.R
  • /usr/share/qcumber/Rscripts/boxplot.R
  • /usr/share/qcumber/Rscripts/sav.R
  • /usr/share/qcumber/__init__.py
  • /usr/share/qcumber/batch_report.html
  • /usr/share/qcumber/config
  • /usr/share/qcumber/input_utils.py
  • /usr/share/qcumber/lib/angular.min.js
  • /usr/share/qcumber/lib/bootstrap-theme.min.css
  • /usr/share/qcumber/lib/bootstrap.min.css
  • /usr/share/qcumber/lib/bootstrap.min.js
  • /usr/share/qcumber/lib/d3.v3.min.js
  • /usr/share/qcumber/lib/jquery.min.js
  • /usr/share/qcumber/modules/__init__.py
  • /usr/share/qcumber/modules/classification.snakefile
  • /usr/share/qcumber/modules/fastqc.snakefile
  • /usr/share/qcumber/modules/init.snakefile
  • /usr/share/qcumber/modules/json_output.py
  • /usr/share/qcumber/modules/mapping.snakefile
  • /usr/share/qcumber/modules/sav.snakefile
  • /usr/share/qcumber/modules/trimming.snakefile
  • /usr/share/qcumber/modules/utils.py
  • /usr/share/qcumber/report.tex