Package - python3-pbcore
Package: python3-pbcore
apt-get install python3-pbcore
apt-get install python3-pbcore
Manuals in package:
Documentations in package:
Primary informations
Download package: http://deb.debian.org/debian/pool/main/p/python-pbcore/python3-pbcore_2.1.2+dfsg-11_all.deb (Size: 2.7MiB)| Property | Value |
|---|---|
| Package | python3-pbcore |
| Source | python-pbcore |
| Version | 2.1.2+dfsg-11 |
| Installed-Size | 3665 |
| Maintainer | Debian Med Packaging Team |
| Architecture | all |
| Provides | python-pbcore |
| Depends | python3-biopython, python3-numpy, python3-pysam, python3:any |
| Recommends | python3-h5py |
| Suggests | python-pbcore-doc (= 2.1.2+dfsg-11) |
| Description | Python 3 library for processing PacBio data files |
| Description-md5 | 6ba5e8d51dabd199abaca71d5fb93f51 |
| Homepage | https://github.com/PacificBiosciences/pbcore |
| Section | python |
| Priority | optional |
| Filename | pool/main/p/python-pbcore/python3-pbcore_2.1.2+dfsg-11_all.deb |
| Size | 2831432 |
| MD5sum | 3b4117dc20b0dfd109d7c03dc7b36f05 |
| SHA256 | 4a00545214f60e55dd053fb2914d9db33df055acc3b8801c818b9c7d7f9b5b2c |
Files in package
- /usr/bin/pbopen
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/PKG-INFO
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/dependency_links.txt
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/entry_points.txt
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/not-zip-safe
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/requires.txt
- /usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/top_level.txt
- /usr/lib/python3/dist-packages/pbcore/__init__.py
- /usr/lib/python3/dist-packages/pbcore/chemistry/__init__.py
- /usr/lib/python3/dist-packages/pbcore/chemistry/chemistry.py
- /usr/lib/python3/dist-packages/pbcore/chemistry/resources/mapping.xml
- /usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons.fasta
- /usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons.fasta.fai
- /usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons_tiny.fasta
- /usr/lib/python3/dist-packages/pbcore/data/__init__.py
- /usr/lib/python3/dist-packages/pbcore/data/barcodes-ed65-450.fasta
- /usr/lib/python3/dist-packages/pbcore/data/barcodes-ed65-450.fasta.fai
- /usr/lib/python3/dist-packages/pbcore/data/blasr-output.m4
- /usr/lib/python3/dist-packages/pbcore/data/blasr-output.m5
- /usr/lib/python3/dist-packages/pbcore/data/chemistry.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/CollectionMetadata.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/__init__.py
- /usr/lib/python3/dist-packages/pbcore/data/datasets/alignment.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/barcode.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/ccsaligned.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/ccsread.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/contig.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/fofn.fofn
- /usr/lib/python3/dist-packages/pbcore/data/datasets/lambda.alignmentset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/lambda.referenceset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim.alignmentset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.reference.fasta
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.referenceset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreadset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.alignmentset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreadset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/reference.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/subread.dataset.xml
- /usr/lib/python3/dist-packages/pbcore/data/datasets/subreadSetWithStats.xml
- /usr/lib/python3/dist-packages/pbcore/data/empty.aligned_subreads.bam
- /usr/lib/python3/dist-packages/pbcore/data/empty.aligned_subreads.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/empty.ccs.bam
- /usr/lib/python3/dist-packages/pbcore/data/empty.ccs.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/empty2.bam
- /usr/lib/python3/dist-packages/pbcore/data/empty2.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/lambdaNEB.fa
- /usr/lib/python3/dist-packages/pbcore/data/lambdaNEB.fa.fai
- /usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam
- /usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam
- /usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi
- /usr/lib/python3/dist-packages/pbcore/data/variants.gff
- /usr/lib/python3/dist-packages/pbcore/data/weird.fa
- /usr/lib/python3/dist-packages/pbcore/data/weird.fa.fai
- /usr/lib/python3/dist-packages/pbcore/io/FastaIO.py
- /usr/lib/python3/dist-packages/pbcore/io/FastqIO.py
- /usr/lib/python3/dist-packages/pbcore/io/FofnIO.py
- /usr/lib/python3/dist-packages/pbcore/io/GffIO.py
- /usr/lib/python3/dist-packages/pbcore/io/VcfIO.py
- /usr/lib/python3/dist-packages/pbcore/io/__init__.py
- /usr/lib/python3/dist-packages/pbcore/io/_utils.py
- /usr/lib/python3/dist-packages/pbcore/io/align/BamAlignment.py
- /usr/lib/python3/dist-packages/pbcore/io/align/BamIO.py
- /usr/lib/python3/dist-packages/pbcore/io/align/BlasrIO.py
- /usr/lib/python3/dist-packages/pbcore/io/align/PacBioBamIndex.py
- /usr/lib/python3/dist-packages/pbcore/io/align/_AlignmentMixin.py
- /usr/lib/python3/dist-packages/pbcore/io/align/_BamSupport.py
- /usr/lib/python3/dist-packages/pbcore/io/align/__init__.py
- /usr/lib/python3/dist-packages/pbcore/io/base.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetErrors.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetIO.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetMembers.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetReader.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetUtils.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetValidator.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetWriter.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/__init__.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/run_split.py
- /usr/lib/python3/dist-packages/pbcore/io/dataset/utils.py
- /usr/lib/python3/dist-packages/pbcore/io/opener.py
- /usr/lib/python3/dist-packages/pbcore/model/__init__.py
- /usr/lib/python3/dist-packages/pbcore/model/baseRegions.py
- /usr/lib/python3/dist-packages/pbcore/sequence.py
- /usr/lib/python3/dist-packages/pbcore/util/ToolRunner.py
- /usr/lib/python3/dist-packages/pbcore/util/__init__.py
- /usr/lib/python3/dist-packages/pbcore/util/decorators.py
- /usr/lib/python3/dist-packages/pbcore/util/statistics.py
- /usr/share/doc/python3-pbcore/README.Debian
- /usr/share/doc/python3-pbcore/README.md
- /usr/share/doc/python3-pbcore/changelog.Debian.gz
- /usr/share/doc/python3-pbcore/changelog.gz
- /usr/share/doc/python3-pbcore/copyright
- /usr/share/man/man1/pbopen.1.gz