Package - python3-bx
Primary informations
Download package: http://deb.debian.org/debian/pool/main/p/python-bx/python3-bx_0.13.0-1+b3_amd64.deb (Size: 695.1KiB)| Property | Value |
|---|---|
| Package | python3-bx |
| Source | python-bx (0.13.0-1) |
| Version | 0.13.0-1+b3 |
| Installed-Size | 3485 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Provides | python3-bx-tools |
| Depends | python3-lzo, libc6 (>= 2.14), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.13~), python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pyparsing, python3:any |
| Description | library to manage genomic data and its alignment |
| Description-md5 | 67d503eba4b89cb2b658656d4c7560a1 |
| Homepage | https://github.com/bxlab/bx-python |
| Section | python |
| Priority | optional |
| Filename | pool/main/p/python-bx/python3-bx_0.13.0-1+b3_amd64.deb |
| Size | 711784 |
| MD5sum | 284408d35921b0c2c9f1aab85db3b857 |
| SHA256 | 071ef6247463988193bfc5b46e0eb342d2bf142bccba902d07926960df429444 |
Files in package
- /usr/bin/aggregate_scores_in_intervals.py
- /usr/bin/align_print_template.py
- /usr/bin/axt_extract_ranges.py
- /usr/bin/axt_to_fasta.py
- /usr/bin/axt_to_lav.py
- /usr/bin/axt_to_maf.py
- /usr/bin/bed_bigwig_profile.py
- /usr/bin/bed_build_windows.py
- /usr/bin/bed_complement.py
- /usr/bin/bed_count_by_interval.py
- /usr/bin/bed_count_overlapping.py
- /usr/bin/bed_coverage.py
- /usr/bin/bed_coverage_by_interval.py
- /usr/bin/bed_diff_basewise_summary.py
- /usr/bin/bed_extend_to.py
- /usr/bin/bed_intersect.py
- /usr/bin/bed_intersect_basewise.py
- /usr/bin/bed_merge_overlapping.py
- /usr/bin/bed_rand_intersect.py
- /usr/bin/bed_subtract_basewise.py
- /usr/bin/bnMapper.py
- /usr/bin/div_snp_table_chr.py
- /usr/bin/find_in_sorted_file.py
- /usr/bin/gene_fourfold_sites.py
- /usr/bin/get_scores_in_intervals.py
- /usr/bin/int_seqs_to_char_strings.py
- /usr/bin/interval_count_intersections.py
- /usr/bin/interval_join.py
- /usr/bin/lav_to_axt.py
- /usr/bin/lav_to_maf.py
- /usr/bin/line_select.py
- /usr/bin/lzop_build_offset_table.py
- /usr/bin/mMK_bitset.py
- /usr/bin/maf_build_index.py
- /usr/bin/maf_chop.py
- /usr/bin/maf_chunk.py
- /usr/bin/maf_col_counts.py
- /usr/bin/maf_col_counts_all.py
- /usr/bin/maf_count.py
- /usr/bin/maf_covered_ranges.py
- /usr/bin/maf_covered_regions.py
- /usr/bin/maf_div_sites.py
- /usr/bin/maf_drop_overlapping.py
- /usr/bin/maf_extract_chrom_ranges.py
- /usr/bin/maf_extract_ranges.py
- /usr/bin/maf_extract_ranges_indexed.py
- /usr/bin/maf_filter.py
- /usr/bin/maf_filter_max_wc.py
- /usr/bin/maf_gap_frequency.py
- /usr/bin/maf_gc_content.py
- /usr/bin/maf_interval_alignibility.py
- /usr/bin/maf_limit_to_species.py
- /usr/bin/maf_mapping_word_frequency.py
- /usr/bin/maf_mask_cpg.py
- /usr/bin/maf_mean_length_ungapped_piece.py
- /usr/bin/maf_percent_columns_matching.py
- /usr/bin/maf_percent_identity.py
- /usr/bin/maf_print_chroms.py
- /usr/bin/maf_print_scores.py
- /usr/bin/maf_randomize.py
- /usr/bin/maf_region_coverage_by_src.py
- /usr/bin/maf_select.py
- /usr/bin/maf_shuffle_columns.py
- /usr/bin/maf_species_in_all_files.py
- /usr/bin/maf_split_by_src.py
- /usr/bin/maf_thread_for_species.py
- /usr/bin/maf_tile.py
- /usr/bin/maf_tile_2.py
- /usr/bin/maf_tile_2bit.py
- /usr/bin/maf_to_axt.py
- /usr/bin/maf_to_concat_fasta.py
- /usr/bin/maf_to_fasta.py
- /usr/bin/maf_to_int_seqs.py
- /usr/bin/maf_translate_chars.py
- /usr/bin/maf_truncate.py
- /usr/bin/maf_word_frequency.py
- /usr/bin/mask_quality.py
- /usr/bin/nib_chrom_intervals_to_fasta.py
- /usr/bin/nib_intervals_to_fasta.py
- /usr/bin/nib_length.py
- /usr/bin/one_field_per_line.py
- /usr/bin/out_to_chain.py
- /usr/bin/prefix_lines.py
- /usr/bin/pretty_table.py
- /usr/bin/qv_to_bqv.py
- /usr/bin/random_lines.py
- /usr/bin/table_add_column.py
- /usr/bin/table_filter.py
- /usr/bin/tfloc_summary.py
- /usr/bin/ucsc_gene_table_to_intervals.py
- /usr/bin/wiggle_to_array_tree.py
- /usr/bin/wiggle_to_binned_array.py
- /usr/bin/wiggle_to_chr_binned_array.py
- /usr/bin/wiggle_to_simple.py
- /usr/lib/python3/dist-packages/bx/__init__.py
- /usr/lib/python3/dist-packages/bx/_seqmapping.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/align/__init__.py
- /usr/lib/python3/dist-packages/bx/align/_core.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/align/_epo.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/align/axt.py
- /usr/lib/python3/dist-packages/bx/align/core.py
- /usr/lib/python3/dist-packages/bx/align/epo.py
- /usr/lib/python3/dist-packages/bx/align/epo_tests.py
- /usr/lib/python3/dist-packages/bx/align/lav.py
- /usr/lib/python3/dist-packages/bx/align/lav_tests.py
- /usr/lib/python3/dist-packages/bx/align/maf.py
- /usr/lib/python3/dist-packages/bx/align/maf_tests.py
- /usr/lib/python3/dist-packages/bx/align/score.py
- /usr/lib/python3/dist-packages/bx/align/score_tests.py
- /usr/lib/python3/dist-packages/bx/align/sitemask/__init__.py
- /usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/align/sitemask/core.py
- /usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py
- /usr/lib/python3/dist-packages/bx/align/sitemask/quality.py
- /usr/lib/python3/dist-packages/bx/align/sitemask/sitemask_tests.py
- /usr/lib/python3/dist-packages/bx/align/tools/__init__.py
- /usr/lib/python3/dist-packages/bx/align/tools/chop.py
- /usr/lib/python3/dist-packages/bx/align/tools/fuse.py
- /usr/lib/python3/dist-packages/bx/align/tools/thread.py
- /usr/lib/python3/dist-packages/bx/align/tools/tile.py
- /usr/lib/python3/dist-packages/bx/arrays/__init__.py
- /usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/arrays/array_tree_tests.py
- /usr/lib/python3/dist-packages/bx/arrays/bed.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bbi/__init__.py
- /usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bbi/bigwig_tests.py
- /usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/binned_array.py
- /usr/lib/python3/dist-packages/bx/binned_array_tests.py
- /usr/lib/python3/dist-packages/bx/bitset.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/bitset_builders.py
- /usr/lib/python3/dist-packages/bx/bitset_tests.py
- /usr/lib/python3/dist-packages/bx/bitset_utils.py
- /usr/lib/python3/dist-packages/bx/cookbook/__init__.py
- /usr/lib/python3/dist-packages/bx/cookbook/attribute.py
- /usr/lib/python3/dist-packages/bx/cookbook/doc_optparse.py
- /usr/lib/python3/dist-packages/bx/filter.py
- /usr/lib/python3/dist-packages/bx/gene_reader.py
- /usr/lib/python3/dist-packages/bx/interval_index_file.py
- /usr/lib/python3/dist-packages/bx/interval_index_file_tests.py
- /usr/lib/python3/dist-packages/bx/intervals/__init__.py
- /usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/intervals/cluster_tests.py
- /usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/intervals/intersection_tests.py
- /usr/lib/python3/dist-packages/bx/intervals/io.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/__init__.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/base_coverage.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/complement.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/concat.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/coverage.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/find_clusters.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/intersect.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/join.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/merge.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/quicksect.py
- /usr/lib/python3/dist-packages/bx/intervals/operations/subtract.py
- /usr/lib/python3/dist-packages/bx/intervals/random_intervals.py
- /usr/lib/python3/dist-packages/bx/intseq/__init__.py
- /usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/misc/__init__.py
- /usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/misc/bgzf_tests.py
- /usr/lib/python3/dist-packages/bx/misc/binary_file.py
- /usr/lib/python3/dist-packages/bx/misc/cdb.py
- /usr/lib/python3/dist-packages/bx/misc/cdb_tests.py
- /usr/lib/python3/dist-packages/bx/misc/filecache.py
- /usr/lib/python3/dist-packages/bx/misc/filecache_tests.py
- /usr/lib/python3/dist-packages/bx/misc/readlengths.py
- /usr/lib/python3/dist-packages/bx/misc/seekbzip2.py
- /usr/lib/python3/dist-packages/bx/misc/seekbzip2_tests.py
- /usr/lib/python3/dist-packages/bx/misc/seeklzop.py
- /usr/lib/python3/dist-packages/bx/misc/seeklzop_tests.py
- /usr/lib/python3/dist-packages/bx/motif/__init__.py
- /usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/motif/io/__init__.py
- /usr/lib/python3/dist-packages/bx/motif/io/transfac.py
- /usr/lib/python3/dist-packages/bx/motif/io/transfac_tests.py
- /usr/lib/python3/dist-packages/bx/motif/logo/__init__.py
- /usr/lib/python3/dist-packages/bx/motif/logo/template.ps
- /usr/lib/python3/dist-packages/bx/motif/pwm.py
- /usr/lib/python3/dist-packages/bx/motif/pwm_tests.py
- /usr/lib/python3/dist-packages/bx/phylo/__init__.py
- /usr/lib/python3/dist-packages/bx/phylo/newick.py
- /usr/lib/python3/dist-packages/bx/phylo/newick_tests.py
- /usr/lib/python3/dist-packages/bx/phylo/phast.py
- /usr/lib/python3/dist-packages/bx/phylo/phast_tests.py
- /usr/lib/python3/dist-packages/bx/pwm/__init__.py
- /usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_pwm.py
- /usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_string.py
- /usr/lib/python3/dist-packages/bx/pwm/maf_select_motifs.py
- /usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py
- /usr/lib/python3/dist-packages/bx/pwm/pwm_score_maf.py
- /usr/lib/python3/dist-packages/bx/pwm/pwm_score_motifs.py
- /usr/lib/python3/dist-packages/bx/pwm/pwm_score_positions.py
- /usr/lib/python3/dist-packages/bx/pwm/pwm_tests.py
- /usr/lib/python3/dist-packages/bx/seq/__init__.py
- /usr/lib/python3/dist-packages/bx/seq/_nib.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-313-x86_64-linux-gnu.so
- /usr/lib/python3/dist-packages/bx/seq/core.py
- /usr/lib/python3/dist-packages/bx/seq/fasta.py
- /usr/lib/python3/dist-packages/bx/seq/fasta_tests.py
- /usr/lib/python3/dist-packages/bx/seq/nib.py
- /usr/lib/python3/dist-packages/bx/seq/nib_tests.py
- /usr/lib/python3/dist-packages/bx/seq/qdna.py
- /usr/lib/python3/dist-packages/bx/seq/qdna_tests.py
- /usr/lib/python3/dist-packages/bx/seq/seq.py
- /usr/lib/python3/dist-packages/bx/seq/seq_tests.py
- /usr/lib/python3/dist-packages/bx/seq/twobit.py
- /usr/lib/python3/dist-packages/bx/seq/twobit_tests.py
- /usr/lib/python3/dist-packages/bx/seqmapping.py
- /usr/lib/python3/dist-packages/bx/seqmapping_tests.py
- /usr/lib/python3/dist-packages/bx/tabular/__init__.py
- /usr/lib/python3/dist-packages/bx/tabular/io.py
- /usr/lib/python3/dist-packages/bx/wiggle.py
- /usr/lib/python3/dist-packages/bx/wiggle_tests.py
- /usr/lib/python3/dist-packages/bx_extras/__init__.py
- /usr/lib/python3/dist-packages/bx_extras/fpconst.py
- /usr/lib/python3/dist-packages/bx_extras/fpconst_tests.py
- /usr/lib/python3/dist-packages/bx_extras/lrucache.py
- /usr/lib/python3/dist-packages/bx_extras/pstat.py
- /usr/lib/python3/dist-packages/bx_extras/stats.py
- /usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/INSTALLER
- /usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/METADATA
- /usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/WHEEL
- /usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/top_level.txt
- /usr/share/doc/python3-bx/README.Debian
- /usr/share/doc/python3-bx/changelog.Debian.amd64.gz
- /usr/share/doc/python3-bx/changelog.Debian.gz
- /usr/share/doc/python3-bx/copyright
- /usr/share/lintian/overrides/python3-bx