Package - python-pysam-tests

Package: python-pysam-tests
apt-get install python-pysam-tests

Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam-tests_0.23.0+ds-1_all.deb (Size: 1.4MiB)

Property	Value
Package	python-pysam-tests
Source	python-pysam
Version	0.23.0+ds-1
Installed-Size	2781
Maintainer	Debian Med Packaging Team
Architecture	all
Enhances	python3-pysam
Description	interface for the SAM/BAM sequence alignment and mapping format (test data)
Description-md5	4435323f3a9a615ced053f5810b4da15
Multi-Arch	foreign
Homepage	https://pysam.readthedocs.org/en/latest
Section	python
Priority	optional
Filename	pool/main/p/python-pysam/python-pysam-tests_0.23.0+ds-1_all.deb
Size	1438628
MD5sum	86ede9f151239e533d2eec4ac162694f
SHA256	a89dbf67484989a165ca95f838360629b305f588941d3aed8393718d8948ee84

Files in package

/usr/share/doc/python-pysam-tests/README.Debian
/usr/share/doc/python-pysam-tests/changelog.Debian.gz
/usr/share/doc/python-pysam-tests/copyright
/usr/share/doc/python-pysam/tests/00README.txt
/usr/share/doc/python-pysam/tests/AlignedSegment_bench.py
/usr/share/doc/python-pysam/tests/AlignedSegment_test.py.gz
/usr/share/doc/python-pysam/tests/AlignmentFileFetchTestUtils.py
/usr/share/doc/python-pysam/tests/AlignmentFileFetch_bench.py
/usr/share/doc/python-pysam/tests/AlignmentFileHeader_test.py.gz
/usr/share/doc/python-pysam/tests/AlignmentFilePileup_bench.py.gz
/usr/share/doc/python-pysam/tests/AlignmentFilePileup_test.py.gz
/usr/share/doc/python-pysam/tests/AlignmentFile_bench.py
/usr/share/doc/python-pysam/tests/AlignmentFile_test.py.gz
/usr/share/doc/python-pysam/tests/PileupTestUtils.py.gz
/usr/share/doc/python-pysam/tests/StreamFiledescriptors_test.py
/usr/share/doc/python-pysam/tests/TestUtils.py.gz
/usr/share/doc/python-pysam/tests/VariantFileFetchTestUtils.py
/usr/share/doc/python-pysam/tests/VariantFile_bench.py
/usr/share/doc/python-pysam/tests/VariantFile_test.py.gz
/usr/share/doc/python-pysam/tests/VariantRecord_test.py
/usr/share/doc/python-pysam/tests/_compile_test.pyx
/usr/share/doc/python-pysam/tests/_compile_test.pyxbld
/usr/share/doc/python-pysam/tests/_cython_flagstat.pyx
/usr/share/doc/python-pysam/tests/_cython_flagstat.pyxbld
/usr/share/doc/python-pysam/tests/cbcf_data/Makefile
/usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf40.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_only_header.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_withcontigs.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf43.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf43_with_utf8.vcf
/usr/share/doc/python-pysam/tests/cbcf_data/gnomad.vcf.gz
/usr/share/doc/python-pysam/tests/cbcf_data/gnomad_fixed.vcf.gz
/usr/share/doc/python-pysam/tests/cbcf_data/missing_genotypes.vcf
/usr/share/doc/python-pysam/tests/compile_test.py
/usr/share/doc/python-pysam/tests/faidx_bench.py
/usr/share/doc/python-pysam/tests/faidx_test.py.gz
/usr/share/doc/python-pysam/tests/linking_test.py
/usr/share/doc/python-pysam/tests/pysam_data/0example_no_seq_in_header.bam
/usr/share/doc/python-pysam/tests/pysam_data/0example_no_seq_in_header_null_bytes.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-chebi.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-chebi.sam
/usr/share/doc/python-pysam/tests/pysam_data/MM-double.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-double.sam
/usr/share/doc/python-pysam/tests/pysam_data/MM-explicit.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-explicit.sam
/usr/share/doc/python-pysam/tests/pysam_data/MM-multi.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-multi.sam
/usr/share/doc/python-pysam/tests/pysam_data/MM-orient.bam
/usr/share/doc/python-pysam/tests/pysam_data/MM-orient.sam
/usr/share/doc/python-pysam/tests/pysam_data/Makefile
/usr/share/doc/python-pysam/tests/pysam_data/empty.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex1.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex1.bed
/usr/share/doc/python-pysam/tests/pysam_data/ex1.fa
/usr/share/doc/python-pysam/tests/pysam_data/ex1.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz.tbi.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex10.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex10.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex1_csi.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex2.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex2_corrupt.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex2_truncated.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex3.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex3.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex4.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex4.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex5.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex5.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex6.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex6.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex7.sam.donottest
/usr/share/doc/python-pysam/tests/pysam_data/ex8.bam
/usr/share/doc/python-pysam/tests/pysam_data/ex8.sam
/usr/share/doc/python-pysam/tests/pysam_data/ex9_fail.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex9_fail.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex9_nofail.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex9_nofail.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex_spliced.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/ex_spliced.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_aligned_pairs.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_aligned_pairs.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_bai.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_btag.bam
/usr/share/doc/python-pysam/tests/pysam_data/example_btag.sam
/usr/share/doc/python-pysam/tests/pysam_data/example_dash_in_chr.bam
/usr/share/doc/python-pysam/tests/pysam_data/example_dash_in_chr.sam
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_header.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_header.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_with_header.bam
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_with_header.sam
/usr/share/doc/python-pysam/tests/pysam_data/example_reverse_complement.bam
/usr/share/doc/python-pysam/tests/pysam_data/example_reverse_complement.sam
/usr/share/doc/python-pysam/tests/pysam_data/example_unmapped_reads_no_sq.bam
/usr/share/doc/python-pysam/tests/pysam_data/example_unmapped_reads_no_sq.sam
/usr/share/doc/python-pysam/tests/pysam_data/explicit_index.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/faidx_empty_seq.fq
/usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fa.gz
/usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fq.gz
/usr/share/doc/python-pysam/tests/pysam_data/issue100.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/issue100.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/rg_with_tab.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/rg_with_tab.sam.gz
/usr/share/doc/python-pysam/tests/pysam_data/softclip.bam
/usr/share/doc/python-pysam/tests/pysam_data/softclip.sam
/usr/share/doc/python-pysam/tests/pysam_data/tag_bug.bam
/usr/share/doc/python-pysam/tests/pysam_data/tag_bug.sam
/usr/share/doc/python-pysam/tests/pysam_data/test.gtf
/usr/share/doc/python-pysam/tests/pysam_data/test_mapped_unmapped.bam
/usr/share/doc/python-pysam/tests/pysam_data/test_mapped_unmapped.sam
/usr/share/doc/python-pysam/tests/pysam_data/test_query_position.bam
/usr/share/doc/python-pysam/tests/pysam_data/test_query_position.sam
/usr/share/doc/python-pysam/tests/pysam_data/test_unaligned.bam
/usr/share/doc/python-pysam/tests/pysam_data/test_unaligned.sam
/usr/share/doc/python-pysam/tests/pysam_data/uncompressed.bam.gz
/usr/share/doc/python-pysam/tests/pysam_data/with_md.bam.gz
/usr/share/doc/python-pysam/tests/refactoring.pl
/usr/share/doc/python-pysam/tests/refactoring.txt.gz
/usr/share/doc/python-pysam/tests/samtools_test.py.gz
/usr/share/doc/python-pysam/tests/tabix_bench.py.gz
/usr/share/doc/python-pysam/tests/tabix_data/Makefile
/usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.bed
/usr/share/doc/python-pysam/tests/tabix_data/example.gff2.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.gff3.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz.tbi
/usr/share/doc/python-pysam/tests/tabix_data/example.sam.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example.vcf40
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz.tbi
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz.tbi
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz.tbi
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz.tbi
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.sam.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.sam.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_large.bed.gz
/usr/share/doc/python-pysam/tests/tabix_data/example_unicode.vcf
/usr/share/doc/python-pysam/tests/tabix_data/fivecolumns.bed
/usr/share/doc/python-pysam/tests/tabix_data/gtf_toofew_fields.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/gtf_toomany_fields.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/gtf_wrong_fields.gtf.gz
/usr/share/doc/python-pysam/tests/tabix_data/vcf/10.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/vcf/11.vcf.gz
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/usr/share/doc/python-pysam/tests/tabix_data/vcf/18.vcf.gz
/usr/share/doc/python-pysam/tests/tabix_data/vcf/2.vcf.gz
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/usr/share/doc/python-pysam/tests/tabix_data/vcf/3.vcf.gz
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/usr/share/doc/python-pysam/tests/tabix_data/vcf/README.txt
/usr/share/doc/python-pysam/tests/tabix_data/vcf/issue85.vcf
/usr/share/doc/python-pysam/tests/tabix_data/vcf/vcf_v42.vcf
/usr/share/doc/python-pysam/tests/tabix_test.py.gz
/usr/share/doc/python-pysam/tests/tabixproxies_test.py.gz
/usr/share/doc/python-pysam/tests/test_samtools_python.py
/usr/share/doc/python-pysam/tests/typechecking_test.py
/usr/share/lintian/overrides/python-pysam-tests