Package - pigx-rnaseq

Package:  pigx-rnaseq
apt-get install pigx-rnaseq
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.1-1_all.deb (Size: 60.2KiB)

PropertyValue
Packagepigx-rnaseq
Version0.1.1-1
Installed-Size176
MaintainerDebian Med Packaging Team
Architectureall
Dependsfastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt, r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore
Recommendshisat2, rna-star
Descriptionpipeline for checkpointed and distributed RNA-seq analyses
Description-md5e48b7ff1eb2b189a5bedb2ce0c32035c
Homepagehttps://github.com/BIMSBbioinfo/pigx_rnaseq
Sectionscience
Priorityoptional
Filenamepool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.1-1_all.deb
Size61696
MD5sum31284ff2cec66262fab4b45074a1c1ad
SHA256286ce30816f15c9348617ee7aa74d60a29c39d94b0942b330eee7df942b6192a

Files in package

  • /usr/bin/pigx-rnaseq
  • /usr/libexec/pigx_rnaseq/qsub-template.sh
  • /usr/libexec/pigx_rnaseq/scripts/collate_read_counts.R
  • /usr/libexec/pigx_rnaseq/scripts/count_reads.R
  • /usr/libexec/pigx_rnaseq/scripts/counts_matrix_from_SALMON.R
  • /usr/libexec/pigx_rnaseq/scripts/deseqReport.Rmd
  • /usr/libexec/pigx_rnaseq/scripts/norm_counts_deseq.R
  • /usr/libexec/pigx_rnaseq/scripts/runDeseqReport.R
  • /usr/libexec/pigx_rnaseq/scripts/translate_sample_sheet_for_report.R
  • /usr/libexec/pigx_rnaseq/scripts/validate_input.py
  • /usr/libexec/pigx_rnaseq/scripts/validate_input_annotation.R
  • /usr/libexec/pigx_rnaseq/snakefile.py
  • /usr/share/doc/pigx-rnaseq/CONTRIBUTING
  • /usr/share/doc/pigx-rnaseq/README.md
  • /usr/share/doc/pigx-rnaseq/changelog.Debian.gz
  • /usr/share/doc/pigx-rnaseq/copyright
  • /usr/share/doc/pigx_rnaseq/README.md
  • /usr/share/man/man1/pigx-rnaseq.1.gz
  • /usr/share/pigx_rnaseq/Logo_PiGx.png
  • /usr/share/pigx_rnaseq/pretty.txt
  • /usr/share/pigx_rnaseq/sample_sheet.csv.example
  • /usr/share/pigx_rnaseq/settings.yaml